BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0003.p (207 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K600.1 B3K600_9BACI Putative uncharacterized protein 304 3e-81 C2XLW3.1 C2XLW3_BACCE Putative uncharacterized protein 276 8e-73 C3HC02.1 C3HC02_BACTU Putative uncharacterized protein 275 3e-72 C0Z4W5.1 C0Z4W5_BREBN Putative uncharacterized protein ydfE 266 6e-70 Q9KFT5.1 Q9KFT5_BACHD BH0392 protein 264 3e-69 >B3K600.1 B3K600_9BACI Putative uncharacterized protein Length = 206 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/206 (69%), Positives = 166/206 (80%) Query: 2 MNPFVQPRQTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGK 61 M Q T I+PKILYYGTPVILL TLNED TVNISPISSSWALGEHIILG+G GGK Sbjct: 1 MKKTAQMIDTELIKPKILYYGTPVILLNTLNEDDTVNISPISSSWALGEHIILGIGLGGK 60 Query: 62 ALENLQRKPECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKA 121 A+ENL+R PECVIN+PD SLWE VE LA LTGK PVP K +GF FEKDK+A +GLT A Sbjct: 61 AIENLERHPECVINIPDPSLWENVERLAPLTGKYPVPDHKLMSGFTFEKDKYAQSGLTPA 120 Query: 122 ESTRVQTARIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPAS 181 +S V+ +RI ECPIQIEA+VNHIR+P+D+ FAIVETQ+VQVH H+ ++ E HIDP Sbjct: 121 DSVTVRPSRITECPIQIEAKVNHIRLPDDSPFFAIVETQAVQVHAHRSIITNEQHIDPGK 180 Query: 182 WNPLIYNFRHYFGLSPELGKSYRSET 207 W+PLIYNFRHYFGL P LGKS+R+ET Sbjct: 181 WSPLIYNFRHYFGLGPSLGKSFRAET 206 >C2XLW3.1 C2XLW3_BACCE Putative uncharacterized protein Length = 206 Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 133/205 (64%), Positives = 158/205 (77%) Query: 2 MNPFVQPRQTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGK 61 M Q T I+PKILYYGT VILL +LNED TVNISP+SSSWALG+ IILG+G GGK Sbjct: 1 MKKMAQVPNTEIIKPKILYYGTSVILLNSLNEDGTVNISPMSSSWALGDCIILGIGLGGK 60 Query: 62 ALENLQRKPECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKA 121 A+ENL+R PECVIN+P SLWE VE LA TGKNPVP KK+ GF +EK+K+ + LT Sbjct: 61 AIENLERHPECVINIPSPSLWENVEQLAPYTGKNPVPDYKKKNGFTYEKEKYDISRLTPT 120 Query: 122 ESTRVQTARIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPAS 181 ES V+ RI ECPIQIEARV HIRIP+ + FAIVETQ++ VH HKE++ +HIDP Sbjct: 121 ESKSVKPTRIMECPIQIEARVKHIRIPDYSPDFAIVETQAIHVHAHKEIILEGNHIDPNK 180 Query: 182 WNPLIYNFRHYFGLSPELGKSYRSE 206 W+PLIYNFRHYFGLS +LGK++RSE Sbjct: 181 WSPLIYNFRHYFGLSNQLGKTFRSE 205 >C3HC02.1 C3HC02_BACTU Putative uncharacterized protein Length = 206 Score = 275 bits (702), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 132/205 (64%), Positives = 158/205 (77%) Query: 2 MNPFVQPRQTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGK 61 M Q T I+PKILYYGT VILL +LNED TVNISP+SSSWALG+ IILG+G GGK Sbjct: 1 MKKMAQVPNTEIIKPKILYYGTSVILLNSLNEDGTVNISPMSSSWALGDCIILGIGLGGK 60 Query: 62 ALENLQRKPECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKA 121 A+ENL+R PECVIN+P SLWE VE LA TGKNPVP KK+ GF ++K+K+ + LT Sbjct: 61 AIENLERHPECVINVPSPSLWENVEQLAPYTGKNPVPDYKKKNGFTYKKEKYDISRLTPT 120 Query: 122 ESTRVQTARIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPAS 181 ES V+ RI ECPIQIEARV HIRIP+ + FAIVETQ++ VH HKE++ +HIDP Sbjct: 121 ESKSVKPTRIMECPIQIEARVKHIRIPDYSPDFAIVETQAIHVHAHKEIILEGNHIDPNK 180 Query: 182 WNPLIYNFRHYFGLSPELGKSYRSE 206 W+PLIYNFRHYFGLS +LGK++RSE Sbjct: 181 WSPLIYNFRHYFGLSNQLGKTFRSE 205 >C0Z4W5.1 C0Z4W5_BREBN Putative uncharacterized protein ydfE Length = 200 Score = 266 bits (681), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 126/195 (64%), Positives = 150/195 (76%) Query: 13 TIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRKPEC 72 TIQPKILYYGTPV+LLTT NED + NISPISSSWALG +ILGLG G LENL+++PEC Sbjct: 6 TIQPKILYYGTPVVLLTTENEDGSTNISPISSSWALGNFVILGLGFGSHGLENLRQRPEC 65 Query: 73 VINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTARIA 132 VINLPDAS+W+QVE LA LTG NPVP K+E GF +E +KF A LT +S V+ R+ Sbjct: 66 VINLPDASMWQQVEALAPLTGSNPVPDYKRELGFRYEANKFQAANLTPVDSDIVRPKRVG 125 Query: 133 ECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNFRHY 192 ECP+Q+EA V IR PE A FAIVET+ VH K++V HH++P +WNPLIYNFRHY Sbjct: 126 ECPLQLEAVVRTIRFPEYADMFAIVETEVRHVHADKQIVQSAHHVNPQAWNPLIYNFRHY 185 Query: 193 FGLSPELGKSYRSET 207 FGL +LGK+YRSET Sbjct: 186 FGLGDQLGKTYRSET 200 >Q9KFT5.1 Q9KFT5_BACHD BH0392 protein Length = 202 Score = 264 bits (675), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 124/198 (62%), Positives = 151/198 (76%) Query: 10 QTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRK 69 ++ TI+P ILYYGTPVILLTTLNED TVNISPISSS+ LG HI+LG+G GGKA+ENL+R Sbjct: 5 KSTTIKPSILYYGTPVILLTTLNEDGTVNISPISSSFVLGNHIVLGIGVGGKAMENLERH 64 Query: 70 PECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTA 129 ECVINLP LWE VE LA TGK PVP EK+ GF FEKDK+ +GLT +S VQ Sbjct: 65 AECVINLPSPELWEHVERLAPYTGKQPVPREKEALGFTFEKDKYGRSGLTPVKSLSVQPD 124 Query: 130 RIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNF 189 RIAECP+Q+EA+V +++P + +FAIVET+ + VH H +V +IDP W+PLIYNF Sbjct: 125 RIAECPLQMEAKVIDVKVPAHSPYFAIVETEVLHVHAHDSIVIDNRYIDPVRWSPLIYNF 184 Query: 190 RHYFGLSPELGKSYRSET 207 RHYF L ELGK++RSET Sbjct: 185 RHYFSLGKELGKTFRSET 202 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,321,480,025 Number of extensions: 54593380 Number of successful extensions: 115491 Number of sequences better than 1.0e-05: 83 Number of HSP's gapped: 115484 Number of HSP's successfully gapped: 83 Length of query: 207 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 78 Effective length of database: 1,845,385,268 Effective search space: 143940050904 Effective search space used: 143940050904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)