BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0002.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3HC03.1 C3HC03_BACTU Putative uncharacterized protein 277 7e-73 C2U7S3.1 C2U7S3_BACCE Putative uncharacterized protein 276 9e-73 C2X5J8.1 C2X5J8_BACCE Putative uncharacterized protein 275 2e-72 C2V514.1 C2V514_BACCE Putative uncharacterized protein 275 3e-72 Q5WIU3.1 Q5WIU3_BACSK ArsR family transcriptional regulator 260 7e-68 >C3HC03.1 C3HC03_BACTU Putative uncharacterized protein Length = 231 Score = 277 bits (708), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 127/229 (55%), Positives = 162/229 (70%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M ANP VA +A+L++E SRA+ILT L+ G HPAS LA AGIKPQTASFHL KM + + Sbjct: 1 MNANPNVAMIATLVSEASRAAILTVLLDGRFHPASELAYMAGIKPQTASFHLTKMVDANV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 +TV QGRHRYYGI +PE+AQV+E LSI+PP+++ SL+ + +D+AMR ARTCYDHLAG Sbjct: 61 VTVEKQGRHRYYGIRNPEVAQVMESFLSIAPPIEIKSLKQASEDKAMRFARTCYDHLAGN 120 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 GVQLT++L G+I EE +GF+VT +GE IDL++VKK RR+F KCLDWSERR Sbjct: 121 LGVQLTDSLIKIGVIYEEKDGFTVTEKGESFFTTFQIDLERVKKKRRSFTHKCLDWSERR 180 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLTFS 229 HH + WV RLP+TRA+ IT+DG+KGL F + Sbjct: 181 HHLAGALGNALLERLLELNWVQRLPKTRAIKITSDGKKGLKETFSFDIT 229 >C2U7S3.1 C2U7S3_BACCE Putative uncharacterized protein Length = 231 Score = 276 bits (706), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 127/229 (55%), Positives = 162/229 (70%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M ANP VA +A+L++E SRA+ILT L+ G HPAS LA AGIKPQTASFHL KM + + Sbjct: 1 MNANPNVAMIATLVSEASRAAILTVLLDGRFHPASELAYMAGIKPQTASFHLTKMVDANV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 + V QGRHRYYGI +PE+AQV+E LSI+PP+++ SL+ + +D+AMR ARTCYDHLAG Sbjct: 61 VIVEKQGRHRYYGIRNPEVAQVMESFLSIAPPIEIKSLKQASEDKAMRFARTCYDHLAGN 120 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 GVQLT++L G+I EE +GF+VT +GE L IDL++VKK RR+F KCLDWSERR Sbjct: 121 LGVQLTDSLIKIGVIYEEKDGFTVTEKGESFFTNLQIDLERVKKKRRSFTHKCLDWSERR 180 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLTFS 229 HH + WV RLP+TRA+ IT+DG+KGL F + Sbjct: 181 HHLAGALGNALLERLLELNWVQRLPKTRAIKITSDGKKGLKETFSFDIT 229 >C2X5J8.1 C2X5J8_BACCE Putative uncharacterized protein Length = 231 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 126/229 (55%), Positives = 161/229 (70%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M ANP VA +A+L++E SRA+ILT L+ G HPAS LA AGIKPQTASFHL KM + + Sbjct: 1 MNANPNVAMIATLVSEASRATILTVLLDGRFHPASELAYMAGIKPQTASFHLTKMVDANV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 + V QGRHRYYGI +PE+AQV+E LSI+PP+++ SL+ + +D+AMR ARTCYDHLAG Sbjct: 61 VIVEKQGRHRYYGIRNPEVAQVMESFLSIAPPIEIKSLKQASEDKAMRFARTCYDHLAGN 120 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 GVQLT++L G+I EE +GF+VT +GE IDL++VKK RR+F KCLDWSERR Sbjct: 121 LGVQLTDSLIKIGVIYEEKDGFTVTEKGESFFTNFQIDLERVKKKRRSFTHKCLDWSERR 180 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLTFS 229 HH + WV RLP+TRA+ IT+DG+KGL F + Sbjct: 181 HHLAGALGNALLERLLELNWVQRLPKTRAIKITSDGKKGLKETFSFDIT 229 >C2V514.1 C2V514_BACCE Putative uncharacterized protein Length = 231 Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 127/229 (55%), Positives = 161/229 (70%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M ANP VA +A+L++E SRA+ILT L+ G HPAS LA AGIKPQTASFHL KM + + Sbjct: 1 MNANPNVAMIATLVSEASRAAILTVLLDGRFHPASELAYMAGIKPQTASFHLTKMVDANV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 + V QGRHRYYGI +PE+AQV+E LSI+PP+++ SL+ + +D+AMR ARTCYDHLAG Sbjct: 61 VIVEKQGRHRYYGIRNPEVAQVMESFLSIAPPIEIKSLKQASEDKAMRFARTCYDHLAGN 120 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 GVQLT++L G+I EE +GF+VT +GE L IDL+ VKK RR+F KCLDWSERR Sbjct: 121 LGVQLTDSLIKIGVIYEEKDGFTVTEKGESFFTNLQIDLEGVKKKRRSFTHKCLDWSERR 180 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLTFS 229 HH + WV RLP+TRA+ IT+DG+KGL F + Sbjct: 181 HHLAGALGNALLERLLELNWVQRLPKTRAIKITSDGKKGLKETFSFDIT 229 >Q5WIU3.1 Q5WIU3_BACSK ArsR family transcriptional regulator Length = 228 Score = 260 bits (664), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/226 (54%), Positives = 156/226 (69%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M ANP VA VASL++EPSRA+ILTAL+ G HPAS LA AGIKPQTASFHL KM E + Sbjct: 1 MNANPNVAIVASLVSEPSRAAILTALLDGRFHPASELAYMAGIKPQTASFHLAKMVEAHV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 + V QGRHRYYGI PEIA+++E LLSI+PP K+ S + QD+A+R ARTCYDHLAG Sbjct: 61 IVVEKQGRHRYYGIQDPEIAKIMESLLSIAPPQKIKSFNQASQDKAIRSARTCYDHLAGA 120 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 GV++T++L II E+ +GF VT GE + I+L+ +K RR+F+ KCLDWSERR Sbjct: 121 LGVKVTDSLLNMNIIREDKDGFVVTESGEEFFQAFQINLENARKKRRSFSHKCLDWSERR 180 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPL 226 HH + WV RLP+TRA+ IT +G++GL F + Sbjct: 181 HHLAGALGNALLERFIELNWVQRLPKTRAIQITDEGKQGLKETFSI 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,226,649,602 Number of extensions: 42944691 Number of successful extensions: 130564 Number of sequences better than 1.0e-05: 321 Number of HSP's gapped: 130382 Number of HSP's successfully gapped: 321 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)