BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0010.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KLT1.1 B3KLT1_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 326 2e-87 A7Z7D9.1 A7Z7D9_BACA2 Xsa EC=3.2.1.37 320 6e-86 B8I0N6.1 B8I0N6_CLOCE Alpha-L-arabinofuranosidase domain protein 318 4e-85 C3J345.1 C3J345_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 317 5e-85 B7YCM7.1 B7YCM7_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 317 5e-85 >B3KLT1.1 B3KLT1_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 497 Score = 326 bits (835), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 158/263 (60%), Positives = 194/263 (73%), Gaps = 3/263 (1%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MD +SLH YTIPG W K A GF EWF TMKK+L+MDELITRHS IMD+YDP +R+ Sbjct: 232 MDAISLHYYTIPGEFWTGKGPATGFSEQEWFTTMKKALHMDELITRHSAIMDQYDPNKRI 291 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 GLI+DEWGTWF EPGTNPGFLYQQNT+RDALVAG+ LNIF H+ RV MANIAQ+VNVL Sbjct: 292 GLIVDEWGTWFDVEPGTNPGFLYQQNTIRDALVAGLTLNIFHEHNDRVVMANIAQIVNVL 351 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 Q++ILTEG+K++LTPTYHVFDMYKVHQD E L Y M E IPQ+SV+ASRDEA Sbjct: 352 QSVILTEGEKMILTPTYHVFDMYKVHQDAERLATHHSGADYEMNGEKIPQVSVTASRDEA 411 Query: 180 GRVYISLCNLSHEDSAGLRIELAGTSAGT--VAGQILTHSDLNAHNTFEAPATVAPAIFE 237 G++++SLCN+SH + + ++I+L G S + G+ L L+AHNTFE+P + PA F Sbjct: 412 GKIHVSLCNVSHAEQSDVKIQLRGLSGAVKQIVGRQLAADSLDAHNTFESPEVLKPAAFT 471 Query: 238 GASLKNGVLDCQLPPASVVVLTL 260 + VL +L P SV VL + Sbjct: 472 AFEQEGDVLRAKLAPMSVTVLEI 494 >A7Z7D9.1 A7Z7D9_BACA2 Xsa EC=3.2.1.37 Length = 496 Score = 320 bits (821), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 156/262 (59%), Positives = 189/262 (72%), Gaps = 2/262 (0%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MDGLSLH YTIPG W+ K A F EWF TMKK+ +MDELITRHS IMD+YDPE+RV Sbjct: 230 MDGLSLHYYTIPGDFWKGKGSATEFTEDEWFITMKKAAHMDELITRHSAIMDQYDPEKRV 289 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 GLIIDEWGTW EPGTNPGFLYQQNT+RDALVA H +IF H+ RVQMANIAQ VNVL Sbjct: 290 GLIIDEWGTWLDPEPGTNPGFLYQQNTIRDALVAATHFHIFHQHADRVQMANIAQTVNVL 349 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 QA+ILTEG +LLTPTYHVFDM+KVHQD LL ++ Y +PQ+S+SAS+ + Sbjct: 350 QAMILTEGKDMLLTPTYHVFDMFKVHQDASLLATETKAARYEWNDGRLPQVSISASKQQN 409 Query: 180 GRVYISLCNLSHEDSAGLRIELAG-TSAGTVAGQILTHSDLNAHNTFEAPATVAPAIFEG 238 G ++IS+CN+ H A ++IEL G G +G IL +NAHNTF +P V P F G Sbjct: 410 GDIHISICNIDHLQKADVKIELRGMKKTGKPSGTILHAEKMNAHNTFSSPENVKPKPFSG 469 Query: 239 ASLKNGVLDCQLPPASVVVLTL 260 + K G L+ +LPP +VV++TL Sbjct: 470 FAQKGGKLEAELPPMAVVLITL 491 >B8I0N6.1 B8I0N6_CLOCE Alpha-L-arabinofuranosidase domain protein Length = 492 Score = 318 bits (814), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 150/261 (57%), Positives = 190/261 (72%), Gaps = 1/261 (0%) Query: 1 MDGLSLHSYT-IPGSWEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MDGLS+H YT I W E+ A FD WF M+ +L+ +EL+ RHSNIMDKYDPE++V Sbjct: 231 MDGLSVHYYTRISKDWSEQGSATEFDENHWFSVMQNALFTEELVVRHSNIMDKYDPEKKV 290 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 G+I+DEWGTWF EPGTNPGFLYQQNT+RDALVAGIHLNIF NH RVQMANIAQMVNVL Sbjct: 291 GMIVDEWGTWFAVEPGTNPGFLYQQNTMRDALVAGIHLNIFNNHCDRVQMANIAQMVNVL 350 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 QA+ILTEG K+LLTPTYHVFDMYKVHQ ELL + ESP Y+ E +PQLS S+S D Sbjct: 351 QAVILTEGKKMLLTPTYHVFDMYKVHQGAELLSLDFESPEYAYNGEKVPQLSASSSVDSE 410 Query: 180 GRVYISLCNLSHEDSAGLRIELAGTSAGTVAGQILTHSDLNAHNTFEAPATVAPAIFEGA 239 G++++++CNL+ + I+L G + + G+I+T + +NA NTFE V FE Sbjct: 411 GKIHVTICNLNPSADVNIDIDLRGVKSKSSTGKIITSNAMNAKNTFEETTNVTIKNFEDI 470 Query: 240 SLKNGVLDCQLPPASVVVLTL 260 +L+N + ++P SVV+L + Sbjct: 471 NLENNHISGKIPSKSVVLLEI 491 >C3J345.1 C3J345_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 505 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 156/263 (59%), Positives = 190/263 (72%), Gaps = 3/263 (1%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MDGLSLH YTIPG W K A F EWF T+KK+LY+DELITRHS IMDKYDPE+RV Sbjct: 232 MDGLSLHYYTIPGDFWLGKGSATDFTEDEWFITLKKALYIDELITRHSTIMDKYDPEKRV 291 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 GLI+DEWGTW+ EPGTNPGFLYQQNT+RDALVA +H +IF NH RV+MANIAQ VNVL Sbjct: 292 GLIVDEWGTWYDVEPGTNPGFLYQQNTIRDALVAALHFHIFHNHCDRVRMANIAQTVNVL 351 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 QA+ILT G++++LTPTYHVFDMYKVHQD ELL + Y E++PQ+S++AS++ Sbjct: 352 QAVILTRGEQMILTPTYHVFDMYKVHQDAELLAIESSCAEYEHRGETLPQVSITASKNGE 411 Query: 180 GRVYISLCNLSHEDSAGLRIELAGTSAG--TVAGQILTHSDLNAHNTFEAPATVAPAIFE 237 G V+ISLCN+ H + A + +E G S V G +LT +++NAHNTFE P V P F Sbjct: 412 GTVHISLCNIDHRNEAVVDLEFRGDSLARKQVFGTMLTANEMNAHNTFEKPDAVKPEPFR 471 Query: 238 GASLKNGVLDCQLPPASVVVLTL 260 L L +LPP SVV L + Sbjct: 472 QIELGQHTLMAKLPPMSVVTLAI 494 >B7YCM7.1 B7YCM7_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 505 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 156/263 (59%), Positives = 190/263 (72%), Gaps = 3/263 (1%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MDGLSLH YTIPG W K A F EWF T+KK+LY+DELITRHS IMDKYDPE+RV Sbjct: 232 MDGLSLHYYTIPGDFWLGKGSATDFTEDEWFITLKKALYIDELITRHSTIMDKYDPEKRV 291 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 GLI+DEWGTW+ EPGTNPGFLYQQNT+RDALVA +H +IF NH RV+MANIAQ VNVL Sbjct: 292 GLIVDEWGTWYDVEPGTNPGFLYQQNTIRDALVAALHFHIFHNHCDRVRMANIAQTVNVL 351 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 QA+ILT G++++LTPTYHVFDMYKVHQD ELL + Y E++PQ+S++AS++ Sbjct: 352 QAVILTRGEQMILTPTYHVFDMYKVHQDAELLAIESSCAEYEHRGETLPQVSITASKNGE 411 Query: 180 GRVYISLCNLSHEDSAGLRIELAGTSAG--TVAGQILTHSDLNAHNTFEAPATVAPAIFE 237 G V+ISLCN+ H + A + +E G S V G +LT +++NAHNTFE P V P F Sbjct: 412 GTVHISLCNIDHRNEAVVDLEFRGDSLARKQVFGTMLTANEMNAHNTFEKPDAVKPEPFR 471 Query: 238 GASLKNGVLDCQLPPASVVVLTL 260 L L +LPP SVV L + Sbjct: 472 QIELGQHTLMAKLPPMSVVTLAI 494 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,571,312,498 Number of extensions: 63708961 Number of successful extensions: 139290 Number of sequences better than 1.0e-05: 211 Number of HSP's gapped: 139074 Number of HSP's successfully gapped: 211 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)