BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0376.0009.p
         (251 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A7V1C5.1 A7V1C5_BACUN Putative uncharacterized protein                191   4e-47

>A7V1C5.1 A7V1C5_BACUN Putative uncharacterized protein
          Length = 270

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 96/223 (43%), Positives = 140/223 (62%)

Query: 1   MQTETIHVLSGFPHQHFRPVIVVHIGAPGDFVELVVPVIARIGLVAAVQVRIIFRTHVAS 60
           +Q +T+H  +   HQHF PVIVV  G  G   + +  ++A +G +AAV+V IIF TH ++
Sbjct: 40  VQGKTVHTAAYAVHQHFGPVIVVVAGTAGYLEKTIAVIVAAVGGIAAVEVGIIFGTHAST 99

Query: 61  AAPVLIPDAKILQRPRLLAPILSPQSRHRGFTVKGHIFHPFGHLLHGTAAYIAANIRFTF 120
           A P  +  A++   P  +A +L+ Q+ H G +  GH+FHPFG   +GT AY++ +I FT 
Sbjct: 100 ATPAFVTHAEVFYFPGFVATVLAAQACHGGVSFGGHVFHPFGKFFYGTTAYVSTDIGFTS 159

Query: 121 QQLAEPEELMCAEVVVLDDPAPVGVDHPLAGFWKADTVLPVILIGETAARPAQHGNIELA 180
           Q  AE EELM +E VV D  +PV V H  A F++ADTV PV+ IG+ A+RPA+ G  EL 
Sbjct: 160 QHFAEIEELMGSETVVFDSASPVVVHHFGAVFFRADTVHPVVFIGKAASRPAKDGYTELL 219

Query: 181 QRSNHVVTDTARIGNRRILAYPNALVNTSAEMLGKVAVNIFIN 223
           Q   +V   T  +GN  +  YP + ++TS++ML K+AV+ F N
Sbjct: 220 QCIEYVGAITVDVGNIGVFTYPKSTIDTSSQMLCKLAVDFFGN 262


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.141    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,511,381,529
Number of extensions: 61194138
Number of successful extensions: 151554
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151554
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 119
Effective length of database: 1,817,122,223
Effective search space: 216237544537
Effective search space used: 216237544537
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)