BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0008.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK60.1 B3KK60_9BACI Binding-protein-dependent transport system... 495 e-138 B6XUA7.1 B6XUA7_9BIFI Putative uncharacterized protein 327 9e-88 C4FFA8.1 C4FFA8_9BIFI Putative uncharacterized protein 324 5e-87 A7A3G4.1 A7A3G4_BIFAD Putative uncharacterized protein 303 2e-80 C1I4D4.1 C1I4D4_9CLOT L-arabinose transport system permease araQ 289 2e-76 >B3KK60.1 B3KK60_9BACI Binding-protein-dependent transport systems inner membrane component Length = 303 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/304 (79%), Positives = 263/304 (86%), Gaps = 1/304 (0%) Query: 1 MSNQVAQQYDKRPRFKEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRS 60 MSN V + + + G K S IS+SKY++Y FLI+LC+IW IPV+FGITTSFRS Sbjct: 1 MSNPVVHEANADTKLTRSGP-KKASTNISVSKYMAYTFLILLCVIWAIPVIFGITTSFRS 59 Query: 61 QSEVVSSGFRLFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGY 120 Q+EVVSSGF L P WIFDNYV IL+NTSTAPILRWLMNS+FIA+MHTLLV+VVISITGY Sbjct: 60 QAEVVSSGFSLLPDNWIFDNYVTILQNTSTAPILRWLMNSVFIATMHTLLVIVVISITGY 119 Query: 121 GYSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIF 180 GYSRM FKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIF Sbjct: 120 GYSRMNFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIF 179 Query: 181 LVRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVI 240 LVRQFM G+PKDLDESA VDGAG FRIY+S C LFSFTGSWNDFLWPVI Sbjct: 180 LVRQFMMGVPKDLDESARVDGAGDFRIYYSIILPLMKPVLIVCGLFSFTGSWNDFLWPVI 239 Query: 241 VFTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNS 300 V+TDV+KMPVTAGLLLLQDIYGNYRMIGQLMGSA+LAIIPTLLLFLFAQKYFVQSINLN+ Sbjct: 240 VYTDVEKMPVTAGLLLLQDIYGNYRMIGQLMGSAILAIIPTLLLFLFAQKYFVQSINLNA 299 Query: 301 GIKG 304 GIKG Sbjct: 300 GIKG 303 >B6XUA7.1 B6XUA7_9BIFI Putative uncharacterized protein Length = 297 Score = 327 bits (838), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 153/299 (51%), Positives = 207/299 (69%), Gaps = 5/299 (1%) Query: 6 AQQYDKRPRFKEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQSEVV 65 A RP E T K I++ Y+ LIVL ++W++PV++ +TTSF+S +E Sbjct: 4 ATMQASRPVIPENKTKKVSPSLIAV-----YVLLIVLAVVWLLPVIYTVTTSFKSVAEFT 58 Query: 66 SSGFRLFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRM 125 S+ F P +W+ DNYV ++E +++ P+L WL NSL I+++ +L V ++++ G+GYSR+ Sbjct: 59 SNAFNFLPAKWVLDNYVTLVEASASYPVLNWLGNSLIISTVFAVLSVAIVALAGFGYSRL 118 Query: 126 KFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQF 185 FK RDTLFF LL IS FP VVN+IP Y+II +LGWVNT WA I+PGL + NIFLVR F Sbjct: 119 NFKYRDTLFFVLLLISMFPAVVNMIPQYRIIASLGWVNTYWACIVPGLGNVANIFLVRNF 178 Query: 186 MNGIPKDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDV 245 M GIPK+LDE+A +DGA F+I+ LFSFTG+WNDFLWP +VF D+ Sbjct: 179 MKGIPKELDEAAEIDGASDFQIFTRIMLPAIRPILIVIFLFSFTGAWNDFLWPTLVFNDI 238 Query: 246 DKMPVTAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSGIKG 304 +KMPVTAGL LL + G Y +G LM + +AI+PTLLLFLFAQKYF+QS+N+ SG+KG Sbjct: 239 NKMPVTAGLQLLSNQMGQYNQMGSLMAATCMAILPTLLLFLFAQKYFLQSLNITSGLKG 297 >C4FFA8.1 C4FFA8_9BIFI Putative uncharacterized protein Length = 292 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 152/294 (51%), Positives = 206/294 (70%), Gaps = 5/294 (1%) Query: 11 KRPRFKEQGTVKSKSPGISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFR 70 RP E T K IS S Y+ LIVL ++W++PV++ +TTSF+S +E S+ F Sbjct: 4 SRPVIPENKTKK-----ISPSLIAVYVLLIVLAVVWLLPVIYTVTTSFKSVAEFTSNAFN 58 Query: 71 LFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGR 130 P +W+ DNYV ++E +++ P+L WL NSL I+++ +L V ++++ G+GYSR+ FK R Sbjct: 59 FLPAKWVLDNYVTLIEASASYPVLNWLGNSLVISTVFAVLSVCIVALAGFGYSRLNFKYR 118 Query: 131 DTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIP 190 DT+FF LL IS FP VVN+IP Y+II +LGWVNT WA I+PGL + NIFLVR FM GIP Sbjct: 119 DTIFFVLLLISMFPAVVNMIPQYRIIASLGWVNTYWACIVPGLGNVANIFLVRNFMKGIP 178 Query: 191 KDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPV 250 K+LDE+A +DGA F+I+ LFSFTG+WNDFLWP +VF D++KMPV Sbjct: 179 KELDEAAEIDGASDFQIFTRIMLPAIRPILIVIFLFSFTGAWNDFLWPTLVFNDINKMPV 238 Query: 251 TAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSGIKG 304 TAGL LL + G Y +G LM + +AI+PTLLLFLFAQ+YF+QS+N+ SG+KG Sbjct: 239 TAGLQLLSNQMGQYNQMGSLMAATCMAIVPTLLLFLFAQRYFLQSLNITSGLKG 292 >A7A3G4.1 A7A3G4_BIFAD Putative uncharacterized protein Length = 298 Score = 303 bits (775), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 139/254 (54%), Positives = 185/254 (72%) Query: 51 VFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENTSTAPILRWLMNSLFIASMHTLL 110 ++ +TTSF+S +E S+ F P +W+ DNY+ ++E +++ P+L WL NSL I+++ +L Sbjct: 45 IYTVTTSFKSVAEFTSNAFNFLPAKWVLDNYMTLIEASASYPVLNWLGNSLIISTVFAVL 104 Query: 111 VVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYKIIDALGWVNTSWAMII 170 V ++++ G+GYSR+ FK RDTLFF LL IS FP VVN+IP Y+II +LGWVNT WA II Sbjct: 105 SVCIVALAGFGYSRLNFKYRDTLFFVLLLISMFPAVVNMIPQYRIIASLGWVNTYWACII 164 Query: 171 PGLAGMGNIFLVRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXXXXXXXXXXCALFSFTG 230 PGL + NIFLVR FM GIPK+LDE+A +DGA F+I+ LFSFTG Sbjct: 165 PGLGNVANIFLVRNFMKGIPKELDEAAEIDGATDFQIFTRIMLPAIRPILIVIFLFSFTG 224 Query: 231 SWNDFLWPVIVFTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQK 290 +WNDFLWP +VF D++KMPVTAGL LL + G Y +G LM + +AIIPTLLLFLFAQK Sbjct: 225 AWNDFLWPTLVFNDINKMPVTAGLQLLSNQMGQYNQMGSLMAATCMAIIPTLLLFLFAQK 284 Query: 291 YFVQSINLNSGIKG 304 YF+QS+N+ SG+KG Sbjct: 285 YFLQSLNITSGLKG 298 >C1I4D4.1 C1I4D4_9CLOT L-arabinose transport system permease araQ Length = 284 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/270 (50%), Positives = 186/270 (68%), Gaps = 2/270 (0%) Query: 35 SYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENTSTAPIL 94 +L ++VL I+WI P+++ I TSF+S+ EV ++GF + P +W+ +NY+ +L +T+ PI+ Sbjct: 17 CFLLVLVLAIVWITPLIWAILTSFKSEVEVQTTGFSILPAKWVVENYIDVLSDTTVTPII 76 Query: 95 RWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYK 154 +W NSLF++ HT+L V++ S+ Y YSR+ FKG++ +F LL FP VVNLIP YK Sbjct: 77 KWFGNSLFVSVTHTILAVIISSMAAYAYSRLNFKGKNAIFGFLLMTMMFPAVVNLIPLYK 136 Query: 155 IIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXX 214 I+D L WVNTSWA+I PGL G+ NIFL+RQFM GIPK+ DESA VDGA +RIY Sbjct: 137 IMDTLNWVNTSWALIFPGLGGVVNIFLIRQFMMGIPKEYDESARVDGASTWRIYTKIIVP 196 Query: 215 XXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSA 274 LFSFTGSWNDFLWP I+ D K+ +TAGL LQ G + LM Sbjct: 197 LCKPILIIVGLFSFTGSWNDFLWPTIIMNDTAKLTLTAGLRTLQT--GYSIKVAHLMAVT 254 Query: 275 VLAIIPTLLLFLFAQKYFVQSINLNSGIKG 304 VLAI+PTL+L+L AQKYF++ ++L SG+KG Sbjct: 255 VLAILPTLILYLVAQKYFMEGLSLQSGVKG 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,758,266,121 Number of extensions: 71053671 Number of successful extensions: 274920 Number of sequences better than 1.0e-05: 5701 Number of HSP's gapped: 262587 Number of HSP's successfully gapped: 5704 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)