BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0007.p (309 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK59.1 B3KK59_9BACI Binding-protein-dependent transport system... 435 e-120 C1I4D3.1 C1I4D3_9CLOT ABC transporter 234 5e-60 C4FFA9.1 C4FFA9_9BIFI Putative uncharacterized protein 222 4e-56 B6XUA8.1 B6XUA8_9BIFI Putative uncharacterized protein 220 2e-55 A7A3G3.1 A7A3G3_BIFAD Putative uncharacterized protein 219 2e-55 >B3KK59.1 B3KK59_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/287 (75%), Positives = 236/287 (82%) Query: 23 NLAPAFFVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFH 82 +L P FFVGPH+ILF VFILLPT YGIYASFT+WNL+N+PVWVGL NYKTILFD+ STF+ Sbjct: 5 SLTPYFFVGPHLILFIVFILLPTLYGIYASFTQWNLINDPVWVGLANYKTILFDAESTFY 64 Query: 83 TQFNNGLKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGAL 142 TQF NGLKNT IF EHKKVK K++IQSI+Y+PGLISISA AL Sbjct: 65 TQFMNGLKNTLIFVVLSVPILIVIPLMIAVSLEHKKVKMKNVIQSILYIPGLISISAAAL 124 Query: 143 IWLLLFNKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQD 202 IW L+FNKQLG+ NVFGS+ W ANQPYAW NMIIYRASISGVS+D Sbjct: 125 IWSLIFNKQLGITNNVFGSETVWAANQPYAWLIIIVITVWGGVGGNMIIYRASISGVSKD 184 Query: 203 LYESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHV 262 LYESAEMDGAG +RRF+SITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQST V Sbjct: 185 LYESAEMDGAGPVRRFSSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTTV 244 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRNAA 309 LMMYIRQLAFG+GESIAGMASAMAVLLGLVILVISALQYYVMNRNA+ Sbjct: 245 LMMYIRQLAFGHGESIAGMASAMAVLLGLVILVISALQYYVMNRNAS 291 >C1I4D3.1 C1I4D3_9CLOT ABC transporter Length = 323 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 132/285 (46%), Positives = 176/285 (61%), Gaps = 2/285 (0%) Query: 23 NLAPAFFVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFH 82 +LAP F+ PH+ILF +F L+P GIY SFTKW++ + P WVG NY IL +S S F+ Sbjct: 6 DLAPYSFIAPHLILFVLFFLIPAVVGIYVSFTKWDIYSTPQWVGFKNYYEILVNSESVFY 65 Query: 83 TQFNNGLKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGAL 142 QF NGL+NTFIF K KG QS+ YVPGL+SISA L Sbjct: 66 EQFWNGLRNTFIFSVLTIPFCIAIPLLFAVLLNTKP-KGYKFFQSVFYVPGLLSISAVML 124 Query: 143 IWLLLFNKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQD 202 W +FNK G+ N+ D++W + P+ W NM+IY+A+I+ V D Sbjct: 125 AWNFMFNKTFGLVNNMTNLDINWGSTFPWYWIALIIITVWWCIGSNMVIYQAAIASVPTD 184 Query: 203 LYESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHV 262 YE+A +DGAG +++F ITLPSI+ ++YT VMTT FN++GQPLM +GGP + V Sbjct: 185 YYEAAAIDGAGALKQFFKITLPSIKSQILYTLVMTTIAQFNIYGQPLMFNNGGPNGANRV 244 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRN 307 L+MYIR+L FG G S+AGMASAMA +LG+ IL I LQ V++R+ Sbjct: 245 LLMYIRELGFGQGSSLAGMASAMAAMLGICILFICILQ-AVLSRD 288 >C4FFA9.1 C4FFA9_9BIFI Putative uncharacterized protein Length = 291 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/279 (45%), Positives = 180/279 (64%), Gaps = 1/279 (0%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 ++ PH I+FAVF ++P +GI +FT+WN++ P +VGL N+ I FD + F++ F Sbjct: 13 YIAPHFIIFAVFGIIPIIFGIGLAFTRWNMVGSPQFVGLQNFAKI-FDPSTYFYSIFWRD 71 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 L +T IF K +KG L Q+I Y+PGLISI+AGAL+W ++F Sbjct: 72 LWHTLIFVLISVPLTIIVPLLLAVALGKKGLKGAGLFQAIFYIPGLISIAAGALVWRMVF 131 Query: 149 NKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLYESAE 208 N Q G+ F +D++W N PYAW N++IYR+++SGV + LYE+A+ Sbjct: 132 NSQFGLLNTTFHTDINWLGNNPYAWITIFVLVLWAGIGGNLVIYRSALSGVDESLYEAAK 191 Query: 209 MDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLMMYIR 268 +DGAG IR F SITLP I+ PL YT +MTT GAFNV+GQP+M+T+GGP T VL+M IR Sbjct: 192 VDGAGPIRIFFSITLPEIKLPLFYTTIMTTTGAFNVWGQPVMLTNGGPNYQTQVLLMDIR 251 Query: 269 QLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRN 307 LAF G + AGMASAMA+LLG++++ I+A+Q MN+ Sbjct: 252 NLAFPAGPAAAGMASAMALLLGIILMAIAAIQLIFMNKE 290 >B6XUA8.1 B6XUA8_9BIFI Putative uncharacterized protein Length = 291 Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/279 (45%), Positives = 179/279 (64%), Gaps = 1/279 (0%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 ++ PH I+FAVF ++P +GI +FT+WN++ P +VGL N+ I FD + F++ F Sbjct: 13 YIAPHFIIFAVFGIIPIIFGIGLAFTRWNMVGSPQFVGLQNFAKI-FDPSTYFYSIFWRD 71 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 L +T IF K +KG L Q+I Y+PGLISI+AGAL+W ++F Sbjct: 72 LWHTLIFVLISVPLTIIVPLLLAVALGKKGLKGAGLFQAIFYIPGLISIAAGALVWRMVF 131 Query: 149 NKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLYESAE 208 N Q G+ F +D++W PYAW N++IYR+++SGV + LYE+A+ Sbjct: 132 NSQFGLLNTTFHTDINWLGKNPYAWITIFVLVLWAGIGGNLVIYRSALSGVDESLYEAAK 191 Query: 209 MDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLMMYIR 268 +DGAG IR F SITLP I+ PL YT +MTT GAFNV+GQP+M+T+GGP T VL+M IR Sbjct: 192 VDGAGPIRIFFSITLPEIKLPLFYTTIMTTTGAFNVWGQPVMLTNGGPNYQTQVLLMDIR 251 Query: 269 QLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRN 307 LAF G + AGMASAMA+LLG++++ I+A+Q MN+ Sbjct: 252 NLAFPAGPAAAGMASAMALLLGIILMAIAAIQLIFMNKE 290 >A7A3G3.1 A7A3G3_BIFAD Putative uncharacterized protein Length = 304 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/279 (44%), Positives = 179/279 (64%), Gaps = 1/279 (0%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 ++ PH I+FAVF ++P +GI +FT+WN++ P +VGL N+ I FD + F++ F Sbjct: 26 YIAPHFIIFAVFGIIPIIFGIGLAFTRWNMVGAPKFVGLQNFAKI-FDPSTYFYSIFWRD 84 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 L +T +F K +KG L Q+I Y+PGLISI+AGAL+W ++F Sbjct: 85 LGHTLLFVLVSVPLTIIVPLLLAVALSKKGLKGAGLFQAIFYIPGLISIAAGALVWRMVF 144 Query: 149 NKQLGMAGNVFGSDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLYESAE 208 N Q G+ F +D++W PYAW N++IYR+++SGV + LYE+A+ Sbjct: 145 NSQFGLLNTTFHTDINWLGKNPYAWITIFVLVLWAGIGGNLVIYRSALSGVDESLYEAAK 204 Query: 209 MDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLMMYIR 268 +DGAG +R F SITLP I+ PL YT +MTT GAFNV+GQP+M+T+GGP T VL+M IR Sbjct: 205 VDGAGPVRIFFSITLPEIKLPLFYTTIMTTTGAFNVWGQPVMLTNGGPNYQTQVLLMDIR 264 Query: 269 QLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRN 307 LAF G + AGMASAMA+LLG++++ I+A+Q MN+ Sbjct: 265 NLAFPAGPAAAGMASAMALLLGIILMAIAAIQLIFMNKE 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,517,968,502 Number of extensions: 53932112 Number of successful extensions: 180146 Number of sequences better than 1.0e-05: 4815 Number of HSP's gapped: 174826 Number of HSP's successfully gapped: 4826 Length of query: 309 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 174 Effective length of database: 1,788,859,178 Effective search space: 311261496972 Effective search space used: 311261496972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)