BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0006.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KK58.1 B3KK58_9BACI Extracellular solute-binding protein family 1 618 e-175 C1I4D2.1 C1I4D2_9CLOT Extracellular solute-binding protein family 1 218 6e-55 A7A3G2.1 A7A3G2_BIFAD Putative uncharacterized protein 176 4e-42 B6XUA9.1 B6XUA9_9BIFI Putative uncharacterized protein 171 1e-40 C4FFB0.1 C4FFB0_9BIFI Putative uncharacterized protein 168 1e-39 >B3KK58.1 B3KK58_9BACI Extracellular solute-binding protein family 1 Length = 413 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 294/368 (79%), Positives = 325/368 (88%) Query: 1 MDQLVKDYNATNPEIKVKHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVLE 60 MDQLVKDYNATNPE KVKHVITSDMYTK+STVLNSGKGVPDL+IIHADRV +VKQGVLE Sbjct: 45 MDQLVKDYNATNPEYKVKHVITSDMYTKISTVLNSGKGVPDLSIIHADRVSSFVKQGVLE 104 Query: 61 PMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESFLD 120 PMTAV AQPE+K++NYLPQAW+TG ++GTQYTVPLDIHSN MYYNK+LLKKYN ESFLD Sbjct: 105 PMTAVMQAQPELKEDNYLPQAWATGNVEGTQYTVPLDIHSNAMYYNKNLLKKYNVESFLD 164 Query: 121 DNVVTIDEMLSLQGKLDEGDYVVNDALLGWVILAQIQDLGGDIQENGKPAVNTPVMKQAF 180 D+VVTIDEMLSLQGKLDEGDYVVNDALLGWV+LAQIQ+LGGDIQ++GKPAVNT MKQAF Sbjct: 165 DDVVTIDEMLSLQGKLDEGDYVVNDALLGWVVLAQIQNLGGDIQQDGKPAVNTEAMKQAF 224 Query: 181 ENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLNFGVTNVYSPTAD 240 +KKI DAGLMTPFGEDGYLMFQ+GNVLFSTDGTWSSTAHA V+GL+FGVTN+YS +AD Sbjct: 225 TEIKKIADAGLMTPFGEDGYLMFQAGNVLFSTDGTWSSTAHATVDGLDFGVTNIYSTSAD 284 Query: 241 KFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRENSIEWAKAGQIVASKQVNESPDFK 300 +TNR+SSHLFSM+KN+ R++EK IG FLEFIR++SIEWAKAGQIVASKQV ESPD+ Sbjct: 285 TYTNRASSHLFSMLKNEKRTDEKEQAIGQFLEFIRQHSIEWAKAGQIVASKQVIESPDYN 344 Query: 301 NYIQSFFTSNEKEVESLXXXXXXXXXXXXXXVDTYCGDIVRGNVDIDETLQTMQKFVEDK 360 NYIQSFFTSNEKE+ESL VDTY DIVRGNVDIDETL TMQKFVEDK Sbjct: 345 NYIQSFFTSNEKEIESLYIYTYEYYPYVAEAVDTYAADIVRGNVDIDETLATMQKFVEDK 404 Query: 361 IAEGTGGA 368 IAEG A Sbjct: 405 IAEGNSAA 412 >C1I4D2.1 C1I4D2_9CLOT Extracellular solute-binding protein family 1 Length = 417 Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 119/313 (38%), Positives = 197/313 (62%), Gaps = 12/313 (3%) Query: 1 MDQLVKDYNATNPEIKVKH--VITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGV 58 M +++ +YN TNPE KVKH + D+YTK+ TV+ SGK VPD+TI+HA+R+ + +Q + Sbjct: 54 MTRMIDEYNKTNPEYKVKHMPIEADDLYTKIPTVVGSGKDVPDVTIVHAERIALFAEQNL 113 Query: 59 LEPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESF 118 L+P++ A +K+ NY+ AW G+I+ QY++PLD+HS YYNKDLL KY + Sbjct: 114 LQPLSKYIEASGVVKESNYVENAWQMGSINDEQYSIPLDVHSFATYYNKDLLAKY-GPNV 172 Query: 119 LDDNVVTIDEMLSLQGKLDEGDYVVNDAL-LGWV---ILAQIQDLGGDIQENGKPA-VNT 173 LDD ++T+DE+ + GK D + AL L W+ L+ + L GDI ++GK +++ Sbjct: 173 LDDGIITLDEVKEV-GKKSAADNI--PALGLTWMRVQYLSYLAQLNGDISKDGKEVNLDS 229 Query: 174 PVMKQAFENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLNFGVTN 233 P K+ F + + + + T G+D +F++G ++F +G W + G++ +N+G+T+ Sbjct: 230 PEAKKIFAELNGLVNDKIATQDGDDPGQLFRAGQLVFWPEGIWMQNSLKGID-VNWGLTH 288 Query: 234 VYSPTADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRENSIEWAKAGQIVASKQV 293 + + + + SSSH F M+KN ++EK G+ +F+ +I ENS+EWAKAGQ+ A+ + Sbjct: 289 MVTMDQNNPKDWSSSHQFVMLKNDKMTDEKAKGVMDFVNWIGENSLEWAKAGQVPANYAI 348 Query: 294 NESPDFKNYIQSF 306 E+ +FK Q+F Sbjct: 349 RENEEFKAMPQAF 361 >A7A3G2.1 A7A3G2_BIFAD Putative uncharacterized protein Length = 367 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/363 (30%), Positives = 193/363 (53%), Gaps = 4/363 (1%) Query: 1 MDQLVKDYNA-TNPEIKVKHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVL 59 M ++VK+YNA ++ ++ + + D+ TK+ +V+ +GK +PD+ I + QG+L Sbjct: 1 MQRIVKEYNAQSDYKVVFQPMNGGDLTTKIYSVMQTGKNIPDIIIGDQFQTAVLQSQGLL 60 Query: 60 EPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESFL 119 + M P++K+ ++LP W T++G Y +PL ++ +YYNKDL+KKYN + L Sbjct: 61 DTMDDWQKVAPDLKESSFLPATWKGVTVNGKAYGIPLYLYQMAIYYNKDLVKKYNLQYIL 120 Query: 120 DDNVVTIDEMLSLQGKLDEGDYVVNDALLGWVILAQIQDLGGDIQENGKPAVNTPVMKQA 179 DD VTIDE+ L+GKL +G Y + L W ++ + GG + EN + V ++ Sbjct: 121 DDGFVTIDEIKDLKGKLPKGTYALTYGNLPWAFMSLLYGAGGTL-ENDMDDLTKDVWRKP 179 Query: 180 FENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLN-FGVTNVYSPT 238 E +K+ DAG++ P DG F SG +F+ GTW+ + G + N + Sbjct: 180 MEKLKEAYDAGVIAPMDVDGEQAFGSGKAVFAQLGTWAQGNMSNTLGADKIAEANTLQYS 239 Query: 239 ADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRENSIEWAKAGQIVASKQVNESPD 298 AD N + +K+ RS K A +F++++ E+ ++W++ G I + + +P+ Sbjct: 240 ADNPVNFFYQCNWMQLKDPHRSAAKSAAAADFVKYVYEHWMDWSEVGSISPAYRDLNNPE 299 Query: 299 FKNYIQSFFTSNEKEVESLXXXXXXXXXXXXXXVDTYCGDIVRGNVDIDETLQTMQKFVE 358 ++ IQ+ FT+++KE + + TY DIV GNV ++E L+T+ + Sbjct: 300 YQKLIQASFTNSKKERDYIKTSNYLYGGYATAGWGTY-NDIVYGNVGLEEGLKTLDLMAQ 358 Query: 359 DKI 361 +I Sbjct: 359 GQI 361 >B6XUA9.1 B6XUA9_9BIFI Putative uncharacterized protein Length = 423 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 108/363 (29%), Positives = 188/363 (51%), Gaps = 4/363 (1%) Query: 1 MDQLVKDYNA-TNPEIKVKHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVL 59 M ++VK+YN ++ ++ + + +D+ TK+ +V+ +GK +PD+ I + QG++ Sbjct: 57 MQRIVKEYNRQSDYKVVFQPMNGNDLTTKIYSVMQTGKNIPDIIIGDQFQTAVLQSQGLI 116 Query: 60 EPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESFL 119 M PE+K+ ++LP W T++G Y +PL + +YYNKDL+KKYN + L Sbjct: 117 NTMDDWQKVAPELKESSFLPATWKGVTVNGKAYGIPLYLFQMAIYYNKDLVKKYNLQYIL 176 Query: 120 DDNVVTIDEMLSLQGKLDEGDYVVNDALLGWVILAQIQDLGGDIQENGKPAVNTPVMKQA 179 DD VTIDE+ L+GKL EG Y + L W ++ + GG + EN + V ++ Sbjct: 177 DDGYVTIDEIKDLKGKLPEGTYALTYGNLPWAFMSLLYGAGGTL-ENDMDDLTKDVWRKP 235 Query: 180 FENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLN-FGVTNVYSPT 238 + +K DAG++ P DG F SG +F+ GTW+ + G + N Sbjct: 236 MQKLKDAYDAGVVAPMDVDGEQAFGSGKAVFAQLGTWAQGNMSDTLGADKIAEANTLQYD 295 Query: 239 ADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRENSIEWAKAGQIVASKQVNESPD 298 AD N + +K+ RS K A +F+ ++ E+ ++W++ G I + + +P+ Sbjct: 296 ADNPVNFFYQCNWMQLKDPHRSAAKSAAAADFVNYVYEHWMDWSEVGSISPAYRDLNNPE 355 Query: 299 FKNYIQSFFTSNEKEVESLXXXXXXXXXXXXXXVDTYCGDIVRGNVDIDETLQTMQKFVE 358 ++ IQ+ FT+ +KE +++ TY DIV GNV ++E L+T+ + Sbjct: 356 YQKLIQASFTNGKKERDAIKTSNYLYGGYATAGWGTY-NDIVYGNVGLEEGLKTLDLMAQ 414 Query: 359 DKI 361 +I Sbjct: 415 GQI 417 >C4FFB0.1 C4FFB0_9BIFI Putative uncharacterized protein Length = 424 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/364 (30%), Positives = 186/364 (51%), Gaps = 6/364 (1%) Query: 1 MDQLVKDYNATNPEIKV--KHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGV 58 M +++K+YN + E KV + + +D+ TK+ +V+ +GK +PDL I + QG+ Sbjct: 58 MQRIIKEYN-KHSEYKVVFQPMNGNDLTTKIYSVMQTGKNIPDLIIADQFQTAVLQSQGL 116 Query: 59 LEPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESF 118 L M PE+K+ N+LP W TI G Y +PL ++ +YYNK+L+KKYN + Sbjct: 117 LNTMDDWQKVAPELKESNFLPATWKGVTIGGKTYGIPLYLYQMAIYYNKELVKKYNLQYI 176 Query: 119 LDDNVVTIDEMLSLQGKLDEGDYVVNDALLGWVILAQIQDLGGDIQENGKPAVNTPVMKQ 178 LDD VTIDE+ SL+GKL + Y + L W ++ + GG + EN + ++ Sbjct: 177 LDDGYVTIDEIKSLKGKLPKDVYGLTYGNLPWAFMSLLYGAGGTL-ENDMDDLTKDAWRK 235 Query: 179 AFENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLN-FGVTNVYSP 237 + +K D G++ P DG F SG +F+ GTW+ + G + N Sbjct: 236 PMQKLKDAYDTGVVAPMDVDGEQAFGSGKAVFAQLGTWAQGNMSDTLGADKIAEANTLQY 295 Query: 238 TADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRENSIEWAKAGQIVASKQVNESP 297 AD N + +K+ RS K A +F+ ++ E+ ++WA+ G I + + +P Sbjct: 296 DADNPVNFFYQCNWMQLKDPHRSAAKSAAAADFVNYVYEHWMDWAEVGSISPAYRDLNNP 355 Query: 298 DFKNYIQSFFTSNEKEVESLXXXXXXXXXXXXXXVDTYCGDIVRGNVDIDETLQTMQKFV 357 +++ IQ+ FT+ +KE +++ TY DIV GNV ++E L+T+ Sbjct: 356 EYQKLIQASFTNGKKERDAIKTSNYLYGGYATAGWGTY-NDIVYGNVGLEEGLKTLDLMA 414 Query: 358 EDKI 361 + +I Sbjct: 415 QGQI 418 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,232,229,317 Number of extensions: 94336923 Number of successful extensions: 178057 Number of sequences better than 1.0e-05: 299 Number of HSP's gapped: 178481 Number of HSP's successfully gapped: 300 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)