BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0373.0016.p
         (321 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KHE7.1 B3KHE7_9BACI Binding-protein-dependent transport system...   313   1e-83
B9MMV2.1 B9MMV2_ANATD Binding-protein-dependent transport system...   308   3e-82
B1DEK4.1 B1DEK4_9BACL Binding-protein-dependent transport system...   303   2e-80
B1DGQ2.1 B1DGQ2_9BACL Binding-protein-dependent transport system...   301   5e-80
B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport system...   298   3e-79

>B3KHE7.1 B3KHE7_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 320

 Score =  313 bits (803), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/319 (48%), Positives = 208/319 (65%), Gaps = 2/319 (0%)

Query: 3   VPLNAAKAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDF 62
           V  N  K  +     K+ S+  K ++ NRY+YL+LLP V Y+++F Y PMYG  IAFKD+
Sbjct: 4   VQRNIVKTATGNRAEKKWSMIKKDIIRNRYIYLILLPVVAYYIVFHYGPMYGLQIAFKDY 63

Query: 63  NPFSGVAGSPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXX 122
               G+ GSPW+GF +FE FF +YYF+RL++NT L++ Y LLF FP              
Sbjct: 64  GLADGIWGSPWMGFDHFESFFGNYYFWRLIRNTLLINIYELLFAFPASIILALLLNEIRR 123

Query: 123 XXXXSFLQTVSYLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFR 182
                 +QT+SYLPHFIS++V+ GM+IDF                  EPI F+  P WFR
Sbjct: 124 SFFKRIVQTISYLPHFISIVVVVGMMIDFFA--RDGLVNQLLGMIGLEPIAFIQEPGWFR 181

Query: 183 TIYVGSGMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXX 242
            +YV SG+WQ +GW SIIYLAA++ I+P+LY+AA +DGAGRWKQ  HITLPGI+P     
Sbjct: 182 FMYVSSGVWQGIGWGSIIYLAAIANIDPTLYDAARIDGAGRWKQTLHITLPGIMPTIVIL 241

Query: 243 XXXXXXXXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINF 302
                        +KIIL+YNP TY TADVIST+V+R+G++ AD+ ++AAVGLFNSVI+F
Sbjct: 242 FILNMGSMLSVGSEKIILMYNPMTYETADVISTYVFRKGILGADFGYTAAVGLFNSVISF 301

Query: 303 TLLVLANRISRKTTENSLW 321
            L+VLAN IS++ +E+ LW
Sbjct: 302 ILIVLANSISKRVSEHKLW 320


>B9MMV2.1 B9MMV2_ANATD Binding-protein-dependent transport systems inner
           membrane component
          Length = 317

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 154/315 (48%), Positives = 205/315 (65%), Gaps = 2/315 (0%)

Query: 9   KAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGV 68
           KA  +  Q  R     K L+ N+ LYLM++P V Y+ IF Y PMYG  IAFKDF P  G+
Sbjct: 3   KATIKSYQPSRWQELKKDLIRNKSLYLMIIPVVAYYFIFHYIPMYGLQIAFKDFTPAKGI 62

Query: 69  AGSPWVGFKNFEKFF--ESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXX 126
            GSPWVG + F++FF  +S+Y +R+++NT L++ Y L+F FP                  
Sbjct: 63  WGSPWVGLEKFKEFFVYDSFYVWRIIRNTILINVYDLIFGFPAPIIFALLLNEIKNSIYK 122

Query: 127 SFLQTVSYLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYV 186
             LQTVSY+PHFIS +VI GMI+DF                  EPI F+  P WFR +YV
Sbjct: 123 RTLQTVSYMPHFISTVVIVGMIMDFFARDGLINQILKSLGILSEPISFMTEPGWFRPLYV 182

Query: 187 GSGMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXX 246
           GSG+WQ+LGW SI+YLAA+S I+P LYEAA++DGAGR++Q  ++T+PGILP         
Sbjct: 183 GSGIWQNLGWGSIVYLAAISNIDPQLYEAALIDGAGRFRQTLYVTIPGILPTIVIMFLLR 242

Query: 247 XXXXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLV 306
                   ++K+ L+YNP TY TADVIST+VYR+G++E DYS+ AAVGLFNSVINF L++
Sbjct: 243 VGHMMNVGFEKVFLMYNPLTYETADVISTYVYRKGLLEMDYSYGAAVGLFNSVINFLLVI 302

Query: 307 LANRISRKTTENSLW 321
            +N+I++K TE SLW
Sbjct: 303 FSNKIAKKLTETSLW 317


>B1DEK4.1 B1DEK4_9BACL Binding-protein-dependent transport systems inner
           membrane component
          Length = 298

 Score =  303 bits (775), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 156/293 (53%), Positives = 201/293 (68%), Gaps = 3/293 (1%)

Query: 30  NRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGVAGSPWVGFKNFEKFFESYYFF 89
           N+Y+Y MLLP V+Y+++F Y PMYG  IAFKDF+P  G+ GS WVGF +F+ F+ESYYF+
Sbjct: 8   NKYIYFMLLPVVVYYVVFMYLPMYGLQIAFKDFSPAKGIWGSAWVGFDHFKSFYESYYFW 67

Query: 90  RLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSFLQTVSYLPHFISLIVICGMII 149
           RL++NT L+S Y L+F FP                  + +Q+++YLPHFIS++V+ GM+I
Sbjct: 68  RLIRNTLLISLYELVFGFPAPILLALLLNEIRSRYFKNIVQSITYLPHFISVVVVSGMMI 127

Query: 150 DFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVGSGMWQSLGWNSIIYLAALSGIN 209
           DF                  +P+ FLILPEWFR+IYV SG+WQ +GW SIIYLAA+SGI+
Sbjct: 128 DFLSSDGIINQLTGLLGV--QPVSFLILPEWFRSIYVSSGIWQGVGWGSIIYLAAISGID 185

Query: 210 PSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXX-XXXXXXXXWDKIILLYNPGTYV 268
           PSLYEAA  DGAGR++Q+ HIT+PGILP                   +KI+LLYN  TY 
Sbjct: 186 PSLYEAAKSDGAGRFRQIWHITVPGILPTIMIMLILRFGTLMAGGSMEKILLLYNSTTYE 245

Query: 269 TADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVLANRISRKTTENSLW 321
           TADVISTFVYRRG+++ DY FSAA+GLFN+V+NF LLV AN+ SRK    SLW
Sbjct: 246 TADVISTFVYRRGLLQMDYGFSAAIGLFNNVLNFILLVTANKFSRKINNTSLW 298


>B1DGQ2.1 B1DGQ2_9BACL Binding-protein-dependent transport systems inner
           membrane component
          Length = 310

 Score =  301 bits (771), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/289 (51%), Positives = 192/289 (66%), Gaps = 2/289 (0%)

Query: 33  LYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGVAGSPWVGFKNFEKFFESYYFFRLL 92
           +YLM LP + Y++IF Y PMYG  IAFKDF P  G+ GS WVGFK+FE FF   YF+RL+
Sbjct: 24  VYLMALPVLAYYIIFHYGPMYGLQIAFKDFQPSDGIWGSAWVGFKHFESFFNGIYFWRLI 83

Query: 93  KNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSFLQTVSYLPHFISLIVICGMIIDFT 152
            NT L++ Y LLF FP                    +Q++SYLPHFIS++V+ GM++DF 
Sbjct: 84  TNTILLNLYELLFGFPAAIILALLLNEIRKSSFKRIVQSISYLPHFISIVVVAGMMVDFL 143

Query: 153 KPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVGSGMWQSLGWNSIIYLAALSGINPSL 212
                            +PI FL+   WFR +YV SG+WQ +GW SIIYLAA+SGI+P+L
Sbjct: 144 S--RAGLVNQLLGSFGIQPIDFLMEEGWFRFLYVSSGVWQGVGWGSIIYLAAISGIDPTL 201

Query: 213 YEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXXXXXXXXXWDKIILLYNPGTYVTADV 272
           YEAA +DGAGRW+Q  ++TLPGI+P                  +K++LLYNP TY TADV
Sbjct: 202 YEAARIDGAGRWRQTLNVTLPGIMPTIIILLILQMGNMMSVGSEKVLLLYNPLTYSTADV 261

Query: 273 ISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVLANRISRKTTENSLW 321
           IST+VYR+GV+EA YSF+AAVGLFNS+I+F L+V AN+ISR+ +E  LW
Sbjct: 262 ISTYVYRKGVLEASYSFTAAVGLFNSIISFILIVAANKISRRFSETKLW 310


>B3KJV4.1 B3KJV4_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 315

 Score =  298 bits (764), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 148/311 (47%), Positives = 203/311 (65%), Gaps = 5/311 (1%)

Query: 11  QSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGVAG 70
           + RK +    +  LKR   N+++Y++ LP +LY+ +F Y PMYG ++AFKDF+   G+ G
Sbjct: 10  EHRKGKWTTIANDLKR---NKFVYILALPVILYYAVFHYGPMYGLLMAFKDFSIADGIWG 66

Query: 71  SPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSFLQ 130
           S W+GF++F  FF SYYF RLL+NT L++ Y L+F FP                    +Q
Sbjct: 67  SEWIGFEHFRNFFNSYYFERLLRNTVLINVYELIFAFPAPIILALLLNEIRSRLFKRTVQ 126

Query: 131 TVSYLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVGSGM 190
           T+SYLPHF+S++V+ G++ DF                  E I F+    WFRT+YVGSG+
Sbjct: 127 TISYLPHFVSIVVVTGIMFDFLA--RDGLVNQILGFFGIESIPFMSEASWFRTLYVGSGI 184

Query: 191 WQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXXXXX 250
           WQ +GW SIIYLAA++ I+P+LYEAA +DGAGRWKQ+ HITLPG+LP             
Sbjct: 185 WQGVGWGSIIYLAAIATIDPTLYEAAKMDGAGRWKQMLHITLPGMLPTIIIIFILNMGSM 244

Query: 251 XXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVLANR 310
                +K++L+Y+P TY TADVISTFVYRRGV+E DY F+ AVGLFN+V++F LLVLAN 
Sbjct: 245 LSVGSEKVLLMYSPLTYETADVISTFVYRRGVLETDYGFTTAVGLFNAVVSFILLVLANS 304

Query: 311 ISRKTTENSLW 321
           IS++ +E+ LW
Sbjct: 305 ISKRVSEHKLW 315


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.328    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,546,084,730
Number of extensions: 55591020
Number of successful extensions: 164845
Number of sequences better than 1.0e-05: 1598
Number of HSP's gapped: 163017
Number of HSP's successfully gapped: 1602
Length of query: 321
Length of database: 3,060,696,203
Length adjustment: 135
Effective length of query: 186
Effective length of database: 1,788,859,178
Effective search space: 332727807108
Effective search space used: 332727807108
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)