BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0015.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6G6.1 B3K6G6_9BACI Binding-protein-dependent transport system... 328 3e-88 B3KHE8.1 B3KHE8_9BACI Binding-protein-dependent transport system... 324 5e-87 B9MMV3.1 B9MMV3_ANATD Binding-protein-dependent transport system... 323 1e-86 B1DEK3.1 B1DEK3_9BACL Binding-protein-dependent transport system... 318 3e-85 B3KJV5.1 B3KJV5_9BACI Binding-protein-dependent transport system... 318 5e-85 >B3K6G6.1 B3K6G6_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 163/292 (55%), Positives = 214/292 (73%), Gaps = 4/292 (1%) Query: 5 RSIPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSD-AHAIAAGEVSFWPKGFNADAYK 63 RS+ E++FDS NV L S + LYP YVL +S S A + + WPKGF+ D+Y+ Sbjct: 5 RSVSEVLFDSANVFLLCLLSIITLYPFLYVLFASISTPAEFVQHRGILLWPKGFSLDSYR 64 Query: 64 LVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFSG 123 +VFE+ I +Y NT YV+ GT +N+++T LGAY LSR+N+ + IM IV TMFF G Sbjct: 65 MVFENPNIIRSYLNTIFYVVVGTTLNILMTALGAYGLSRKNVMWKGAIMMLIVMTMFFDG 124 Query: 124 GLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFRI 183 GLIP YL V+ +GL DT WAL++P A++ +NLI+MRT FQ +PD+L ESA+IDGA D+ I Sbjct: 125 GLIPKYLLVKNMGLLDTYWALIIPSAMTTWNLIIMRTAFQGVPDALEESARIDGATDWTI 184 Query: 184 LLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNML 243 L RI++PLS+PV+AVM LFY V HWN WF A+IYL+DR+LFPLQLILREILIQ+ +M+ Sbjct: 185 LFRIIIPLSLPVIAVMVLFYGVWHWNKWFDALIYLRDRDLFPLQLILREILIQNDTSSMM 244 Query: 244 AGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 V + E+IK+ATI++AT+PIL +YPFLQKYFVKGVMIGA+KE Sbjct: 245 TSV---GGGDRMPVGETIKYATIMVATLPILFLYPFLQKYFVKGVMIGAIKE 293 >B3KHE8.1 B3KHE8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 171/293 (58%), Positives = 212/293 (72%), Gaps = 4/293 (1%) Query: 4 KRSIPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGE-VSFWPKGFNADAY 62 KRS+ E IF N F++ F+ LYP YVL +S SD IA + F+P GFN DAY Sbjct: 4 KRSLGESIFSVVNTCFMLLLCFVTLYPFLYVLFASLSDPAEIAQFRGMLFFPTGFNLDAY 63 Query: 63 KLVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFS 122 K V ++ I T Y NT YV GT+INL +TTLGAY LSRRN+ + IM IV TM F+ Sbjct: 64 KAVMDNPMILTGYRNTLFYVAGGTIINLFMTTLGAYALSRRNVYFNNFIMFIIVITMVFN 123 Query: 123 GGLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFR 182 GGLIP +L V LG+ DT WALLLPGA+S+FNLI+MRT FQ++P SL ESA+IDGA+D+ Sbjct: 124 GGLIPTFLLVNSLGMLDTPWALLLPGAISSFNLIIMRTAFQAVPVSLEESARIDGANDWI 183 Query: 183 ILLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNM 242 I+ RI++PLSMPV+AVM L+YAVGHWNS+F A+IYL+DR LFPLQL+LREILI +S +M Sbjct: 184 IMSRIIVPLSMPVIAVMVLWYAVGHWNSYFSALIYLRDRELFPLQLVLREILISNSTDSM 243 Query: 243 LAGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 I +IK+ATIII+T+PIL +YPFLQKYFV GV+IGALKE Sbjct: 244 TTDA---AATDRLDIGITIKYATIIISTLPILCLYPFLQKYFVHGVLIGALKE 293 >B9MMV3.1 B9MMV3_ANATD Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 323 bits (827), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 162/294 (55%), Positives = 217/294 (73%), Gaps = 3/294 (1%) Query: 3 IKRSIPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFW-PKGFNADA 61 I++S E+IFD+ N +FL F LYPM YV+ +SFS+ + A P F+ +A Sbjct: 3 IRKSAGEIIFDTFNYIFLGLLCFTMLYPMLYVIFASFSNPIKLMAYRGPLLRPLDFSVEA 62 Query: 62 YKLVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFF 121 YKL+ IW Y NT +YV+ GT IN++LTT+G Y LSR+NL+ ++ IM FI FTM+F Sbjct: 63 YKLLLSYPMIWIGYRNTLVYVVVGTAINILLTTMGGYVLSRKNLKLKNPIMFFIAFTMYF 122 Query: 122 SGGLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDF 181 SGG+IP YL V+ LG+ DT WA+++PGA+S NLI+MRT F ++PDSL ESA+IDGA D+ Sbjct: 123 SGGMIPTYLLVQSLGMIDTIWAMIIPGAISTTNLIIMRTGFHAVPDSLEESARIDGAGDW 182 Query: 182 RILLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQN 241 IL RI++PL+MP++AVM LFYAVGHWN++F A+IYL+ R L+PLQL+LREILI +S +N Sbjct: 183 TILFRIMIPLAMPMIAVMILFYAVGHWNAFFSAIIYLRSRELYPLQLVLREILIMNSTEN 242 Query: 242 MLAGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 M G+ ++E IK+A I+++TVPIL IYPFLQKYFVKGVMIGA+KE Sbjct: 243 MTTGI--SDASDRFAVTELIKYAAIVVSTVPILCIYPFLQKYFVKGVMIGAIKE 294 >B1DEK3.1 B1DEK3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 293 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 163/290 (56%), Positives = 215/290 (74%), Gaps = 4/290 (1%) Query: 7 IPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSD-AHAIAAGEVSFWPKGFNADAYKLV 65 I E IFD N L ++ + LYP YVL +SFS+ A I + P GF+ ++YKLV Sbjct: 7 IREQIFDVANTLLMLILVVITLYPFLYVLFASFSNPADLIQHRGLLLAPAGFSLESYKLV 66 Query: 66 FEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFSGGL 125 FE+ I Y NT IYVI GT +NLV+T+ AY LSRR ++ +M IVFTMFFSGGL Sbjct: 67 FENPMISIGYLNTLIYVIGGTALNLVMTSFAAYALSRRGVKLIGPVMFGIVFTMFFSGGL 126 Query: 126 IPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFRILL 185 IP YLN++ LGL D RWA++LP A+S +NL+VMRT F SIP +L ESA+IDGA+DF+IL Sbjct: 127 IPTYLNMKNLGLLDNRWAMILPSAISTWNLLVMRTSFASIPMALEESARIDGANDFKILF 186 Query: 186 RIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNMLAG 245 RI +P+S+P++AVMTLFY VGHWNS+ A+IYL+ R+L+PLQL+L+EILI +S +M++ Sbjct: 187 RIFIPVSLPIMAVMTLFYGVGHWNSYMDALIYLRTRDLYPLQLVLQEILITNSTDSMMST 246 Query: 246 VXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 V I+E+IK+ATII+ATVPILL+YPFLQ+YFVKGVM+G++KE Sbjct: 247 V---ADVDKGLITETIKYATIIVATVPILLLYPFLQRYFVKGVMLGSIKE 293 >B3KJV5.1 B3KJV5_9BACI Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 165/293 (56%), Positives = 211/293 (72%), Gaps = 5/293 (1%) Query: 4 KRSIPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGE-VSFWPKGFNADAY 62 RS E+ F N L L F+ LYP YV +SFSD ++A + F P N +AY Sbjct: 4 NRSAGEITFVCLNALILTGLCFVTLYPFVYVAFASFSDPASLAQHRGLLFAPLDINFEAY 63 Query: 63 KLVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFS 122 K VF + I T Y NT IYV+AGT INLV T +GAY LSRRNL ++++M IV TMFF Sbjct: 64 KAVFNNPMITTGYRNTLIYVVAGTAINLVATAIGAYVLSRRNLYFKNVLMMLIVITMFFG 123 Query: 123 GGLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFR 182 GGLIP YL + LG+ +T WA+L+PG + FN+I+MRT FQS+P SL ESAKIDGA+D Sbjct: 124 GGLIPTYLLINNLGMLNTIWAMLIPGMIGTFNMIIMRTAFQSVPISLEESAKIDGANDLI 183 Query: 183 ILLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNM 242 IL RI++PLSMPV+AVM L+YAVGHWNS+F A+IYL+DR LFPLQL+LREILI ++ +M Sbjct: 184 ILFRIIIPLSMPVIAVMILWYAVGHWNSYFGALIYLRDRELFPLQLVLREILITNTTDSM 243 Query: 243 LAGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 + I+++IK+ATII++T+PILL+YPFLQKYFVKGV+IGA+KE Sbjct: 244 MT----EASGDRMAIADTIKYATIIVSTLPILLLYPFLQKYFVKGVLIGAIKE 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,575,567,014 Number of extensions: 61486382 Number of successful extensions: 218476 Number of sequences better than 1.0e-05: 5818 Number of HSP's gapped: 210307 Number of HSP's successfully gapped: 5818 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)