BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0013.p (630 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2BFD1.1 Q2BFD1_9BACI Putative uncharacterized protein 315 1e-83 C4EK01.1 C4EK01_STRRS Putative uncharacterized protein 278 1e-72 B3KEX8.1 B3KEX8_9BACI Carbohydrate-binding CenC domain protein 219 8e-55 B3KEW5.1 B3KEW5_9BACI Carbohydrate-binding CenC domain protein 211 3e-52 C4EK00.1 C4EK00_STRRS Putative uncharacterized protein (Fragment) 208 1e-51 >Q2BFD1.1 Q2BFD1_9BACI Putative uncharacterized protein Length = 943 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 211/654 (32%), Positives = 322/654 (49%), Gaps = 44/654 (6%) Query: 2 KALRIGEPLSGLAVWASAHGK-WRGKERIYAVSSGSPCMLFVLDPAGSEPVQQFALEGSD 60 +A +G +S V GK G + +Y V +G+P ++D E ++ + LE + Sbjct: 194 EAENLGVQVSKTTVMLGDIGKDANGNDVLYTVVAGAPAKFAIVDVETEELIKSYPLEDTS 253 Query: 61 HCWGVVAAASG-VYIGG--SGILYRFTHE-QGMENLGEMIPGE---FYTWRLAADDEGKI 113 WGV AA G VY+GG G LYR+ E + NLG + Y +++D GKI Sbjct: 254 GAWGVKVAADGSVYLGGYNQGYLYRYLPETDSLVNLGHPVKTTDAVLYPMDISSD--GKI 311 Query: 114 YGGCYPGGKVFQYNPSTGQFRDYGVMVEGEQYARSM--EAWKGKLYVGVGTRCPHIVELD 171 YGG Y G V++Y+P +GQF ++G M EG+ + RS + ++Y GVG++ H++E D Sbjct: 312 YGGTYGSGSVYEYDPDSGQFTNFGTMAEGQSWVRSTAYDEKNQRIYAGVGSKA-HLIEYD 370 Query: 172 TATGVRAEISLPEECSTEQLVYDLNIVHGKMLVRITPCSRLYIYDLELRRWEKCIEHVSG 231 TG + I LP + + VYDLN++ GK+ + ++I D E + + +G Sbjct: 371 IKTGTKRNI-LPSQYADIISVYDLNLIQGKLFAQKESSYEMFIIDTESGELVEAMNEDTG 429 Query: 232 L-SVSAPDSQ----------GNVYFIKEDILQRYALAAGVLTPTSLAMPEPAGDYGWLEG 280 L + P+S VYF IL Y L + A Y +L+ Sbjct: 430 LKTFDIPESSRGISGKSPVGEKVYFTHLGILHEYDLKKNSFKSLGADLKGSAISYKFLQL 489 Query: 281 HPLNPQGSCLAGVHRDG-TCWIYDPENDRHTVMDFMLQGQPVHLQSLAWGPEGKLYIGGY 339 G L G+ +G + Y+ E + + D L +PV + LA GP+GK+Y GY Sbjct: 490 KEEGFPGYTLVGLSGNGGKLYKYNLETGKLKLTDLALPAEPVQIHELAKGPDGKIYSTGY 549 Query: 340 FAGGLASYDPATSEMISHRGIGQIEGMLAAHGIMYLGVYPKANIFAYDPNLEWNPGS--- 396 G + +Y P + + I GIGQ EG +G MYLG+YP A I+ +DP EWN Sbjct: 550 LPGNMGAYIPTSGKNIVFDGIGQSEGTATLNGKMYLGIYPNARIYEFDPFKEWNRTDSDS 609 Query: 397 -NPKLAFSLQEEE-------QDRAFAW--TLAGDELAIGTVPSYGRNGGALTLFHPVTGT 446 NP L FSL++ E QDR FA ++L IGTVP G GGAL ++ P TG Sbjct: 610 LNPGLLFSLEKNEQIPGYTPQDRPFAMLGVPEHNQLFIGTVPKNGNLGGALAIYEPGTGK 669 Query: 447 R-EVFRGLLPQQSIVSXXXXXXXXXXXXSVWGGLGIAPERKEASLMIWEVNGRRKVWEGV 505 +V+ ++ QSIVS +V GG G P EA L +W++ ++K E + Sbjct: 670 EPDVYWNIMQDQSIVSLTHIGGKVFGGTTVAGGQGSVPATSEAKLFVWDIENKQKTAELI 729 Query: 506 PVPGEQAISALALDDEGKVWGLTAGMLFRFNPVTLKTEQTIPVLPVDWKAMTHFWRGGCE 565 PVPG++AI+AL + +G +WG+ G LF +P ++ + I +D K ++ WR Sbjct: 730 PVPGKKAITALTIGADGNIWGMADGTLFALDPESI---EVIASYQLDDKTSSN-WRNASL 785 Query: 566 LLYREGVLYGVAMNLLFKYDVRLNQLEVLDEDARLLAVDGEGGLYFARTTALYR 619 + +G +YG+ FK++ + E + D LA D G Y + LY+ Sbjct: 786 EIGTDGNIYGIIGRKFFKFNPQNGMQEFIAGDVDHLAQDDFGSFYLSSGIHLYK 839 >C4EK01.1 C4EK01_STRRS Putative uncharacterized protein Length = 661 Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 191/613 (31%), Positives = 291/613 (47%), Gaps = 32/613 (5%) Query: 28 RIYAVSSGS--PCMLFVLDPAGSEPVQQFALEGSDHCWGV-VAAASGVYIG------GSG 78 R+Y+V+S + P L + D + + L G+ W V VA VY+G Sbjct: 66 RVYSVTSSASGPAQLGIRDAHDGRLIAERPLPGALGSWAVTVAPDHSVYVGTYPLSPAQA 125 Query: 79 ILYRFTHEQG-MENLGEMIPGEFYTWRLAADDEGK-IYGGCYPGGKVFQYNPSTGQFRDY 136 YR+ + + +LG I GE + W +A +G +YGG P GKVF+Y+ ++G D Sbjct: 126 RFYRYRPDTDQVTDLGVPIAGETFVWTVAVTPDGSAVYGGTSPSGKVFRYDTASGAVTDL 185 Query: 137 GVMVEGEQYARSMEAWK-GKLYVGVGTRCPHIVELDTATGVRAEISLPEECSTEQLVYDL 195 G V GEQY R + G +Y GVG + L R I P + + YDL Sbjct: 186 GAPVPGEQYIRDLAIGDDGTVYAGVGAGSMKVAVLAPDGTTRKIIDPPIQG--KGYAYDL 243 Query: 196 NIVHGKMLVR---ITPCSRLYIYDLELRRWEKCIEHVSGLSVSAPDSQGNVYFIKEDILQ 252 ++ +LVR T + + +YD W+ ++ V L+V +Y ++D L Sbjct: 244 DLAGRYLLVRYGTTTSTNPMGVYDTARGVWKDVVDDVDSLTVGGGRHGQQLYLWQDDELA 303 Query: 253 RYALAAGVLTPTSLAMPEPAGDYGWLEGHPLNPQGSCLAGVHRDGTCWIYDPENDRHTVM 312 RY L +G L ++G L G L G G W YD + + +++ Sbjct: 304 RYDLKSGELVKLGFT------EFGGGAARTLGWVGHTLVGTGSTGRIWNYDRKTGKGSLL 357 Query: 313 DFMLQGQPVHLQSLAWGPEGKLYIGGYFAGGLASYDPATSEMISHRGIGQIEGMLAAHGI 372 L GQPV ++S+ GP+G++Y GG+F GGLA+YDPAT + S IGQ EG++ G Sbjct: 358 AGTLTGQPVSIRSMTTGPDGRIYAGGFFTGGLAAYDPATGQTQSWPDIGQSEGLVTHKGK 417 Query: 373 MYLGVYPKANIFAYDPNLEWNPGSNPKLAFSLQEEEQDRAFAWTLAGDELAIGTVPSYGR 432 +YLGVYP A I +D G+ K L+++EQDR FA AGD LA GTVP G Sbjct: 418 LYLGVYPGARIHEFD-------GTAFKQLLDLRDQEQDRPFALVSAGDWLAFGTVPRAGT 470 Query: 433 NGGALTLFHPVTGTREVFRGLLPQQSIVSXXXXXXXXXXXXSVWGGLGIAPERKEASLMI 492 GG L+ P TG + + R ++P SIV S +GG+G+ P+ A + Sbjct: 471 VGGVFGLYDPATGRKVIKRNIVPGHSIVGLAYRDGVVYGTTSAFGGVGV-PQGDAAHVFA 529 Query: 493 WEVNGRRKVWEGVPVPGEQAISALALDDEGKVWGLTAGMLFRFNPVTLKTEQTIPVLPVD 552 +++ W+ PVPG+ A+ ++ DD GK+WGLT LF +P T +T +T+ Sbjct: 530 YDIATDSIKWQTAPVPGDLALGSITFDDAGKLWGLTPDALFEMDPATGQTLRTVKHQTYA 589 Query: 553 WKAMTHFWRGGCELLYREGVLYGVAMNLLFKYDVRLNQLEVLDEDARLLAVDGEGGLYFA 612 W+ T W + + G L+G +++ D + ++ L +G LY + Sbjct: 590 WQNQTQVWL-DTNIEFHAGALWGKVQGKVYRIDRAAMKFTLITRPISNLVKGPDGHLYLS 648 Query: 613 RTTALYRMQILES 625 R +I S Sbjct: 649 RVENFSTYRICGS 661 >B3KEX8.1 B3KEX8_9BACI Carbohydrate-binding CenC domain protein Length = 1026 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 180/627 (28%), Positives = 301/627 (48%), Gaps = 43/627 (6%) Query: 28 RIYAVSSGSPCMLFVLDPAGSEPVQQFALEGSDHCWGVVAAASG-VYIGG--SGILYRFT 84 +Y ++G+P + LD + E + ++G + +GV A + G VYI G +G+LYR++ Sbjct: 226 EVYFATNGTPSTFYALDASTGEVIYSSPVQGVNTVYGVAAGSDGNVYISGVENGMLYRYS 285 Query: 85 -HEQGMENLGEMIPGEFYTWRLAADDEGKIYGGCYPGGKVFQYNPSTGQFRDYGVMVEGE 143 + +E++G + P E W LAA +GKIYG YP K+F+Y+ ++ QFRD G + E Sbjct: 286 PAAKTLESVG-VNPSEKLVWDLAATSDGKIYGATYPNSKIFEYDIASNQFRDLGSVREDV 344 Query: 144 QYARSMEAWKGKLYVGVGTRCPHIVELDTATGVRAEISLPEECSTEQLVYDLNIVHGKML 203 YAR + + +YVGVG ++ ++D TG ++E+ LP + ++ D+ +GK+ Sbjct: 345 MYARGIGVTEQYIYVGVGNPA-YLYKIDRQTGEQSEVKLPNSGDND-MIADIWSYNGKLF 402 Query: 204 VRITPCSRLYIYDLELRR------WEKCIEHVSGLSVSAPDSQGNVYF--IKEDILQRYA 255 VR + + L+I D E W S +S +P + VYF + L Y Sbjct: 403 VR-SGATTLFILDEETEEVLQSLPWPSPTRFDSMISPPSPLDRDLVYFRNVVNSELVTYN 461 Query: 256 LAAGVLTPTS-LAMPEPA-GDYGWLEGHPLNPQG-SCLAGVHRDGTCWIYDPENDRHTVM 312 A + P + +P Y W+ + G + LA V ++DPE+ + Sbjct: 462 TATNEIIPLEGVVLPNSTVRAYDWVTPQTGHKAGKTLLAMVTEKLEYVLFDPEDRSVETI 521 Query: 313 DFMLQGQPVHLQSLAWGPEGKLYIGGYFAGGLASYDPATSEM-ISHRGIGQIEGMLAAHG 371 ++ + + +QS+ GPEGKLY+GG F L+ ++P ++ + R QIEG+ + Sbjct: 522 MPEIEAEGIDIQSMEMGPEGKLYMGG-FHTALSIFNPVSNAYELQERVFPQIEGIGFLND 580 Query: 372 IMYLGVYPKANIFAYDPNLEWNPGSNPKLAFSLQEEEQDRAFAWTLAGDELAIGTVPSYG 431 +Y G Y A I+ YDP+ + NP LAF++ E+ Q R FA+ D+L IGT+ YG Sbjct: 581 KVYFGTYGGAVIYRYDPSQPYKKDVNPSLAFNI-EDGQSRPFAFASGDDQLFIGTIADYG 639 Query: 432 RNGGALTLFHPVTGTREVFRGLLPQQSIVSXXXXXXXXXXXXSVWGGLGIAPERKEASLM 491 GALT++ T T ++ QS++S ++ GG G P EA + Sbjct: 640 LVKGALTMYDEPTDTWTTIPDIVENQSVMSVAYKDGLVYGGTTIHGGGGSTPAASEAKMF 699 Query: 492 IWEVNGRRKVWEGVP-VPG---EQAISALALDDEGKVWGLTAGM---------LFRFNP- 537 I++ + KV E P +PG Q I L +G +WG+T G +F + Sbjct: 700 IFDPKAKSKVKEFSPAIPGMTSHQLIGDLKEGPDGLLWGVTWGKTASGTTVYSVFAMDAA 759 Query: 538 --VTLKTEQTIPVLPVDWKAMTHFWRGGCELLYREGVLYGVAMNLLFKYDVRLNQLEVLD 595 V K++ P P +F R G +G+LY L + + + Sbjct: 760 SQVIKKSKLLYPNTPSGSTWRPYFLRFG-----DDGLLYTTVGRTLTVINPETMDSQKIA 814 Query: 596 EDARLLAVDGEGGLYFARTTALYRMQI 622 + L+ + +GG+Y+A + L ++ I Sbjct: 815 DSVNLMTLAEDGGIYYAEGSHLKKLPI 841 >B3KEW5.1 B3KEW5_9BACI Carbohydrate-binding CenC domain protein Length = 943 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 186/660 (28%), Positives = 293/660 (44%), Gaps = 59/660 (8%) Query: 5 RIGEPLSGLAVWASAHGKWR-GKERIYAVSSGSPCMLFVLDPAGSEPVQQ---FALEGSD 60 +G S L + +A GK R G++ ++ V+ G P V+D A E AL+GS+ Sbjct: 196 NLGPQSSSLTLMTAAFGKDRNGQDALFTVAQGDPAQFIVMDVASKEVKSTHPLVALDGSN 255 Query: 61 --HCWGVVAAASG-VYIGGS--GILYRFT-HEQGMENLGEMIPGEFYTWRLAADDEGKIY 114 W +V A+ G VYIG + G L+++ E + +G+ +P + W L A ++GK+Y Sbjct: 256 VSAAWAIVTASDGKVYIGSTPNGTLFQYDPAEDKLRAIGKPVPTDTVIWTLVAGEDGKVY 315 Query: 115 GGCYPGGKVFQYNPSTGQFRDYGVMVEG--EQYARSM--EAWKGKLYVGVGTRCPHIVEL 170 GG +F+Y+P T Q R E + RS+ ++ + +YVG G + + Sbjct: 316 GGTGYSQSLFEYDPVTDQTRILKSFKTSSKEAHIRSLAYDSDRQMIYVG-GADVAKLYQY 374 Query: 171 DTATGVRAEISLPEECSTEQLVYDLNIVHGKMLVRITPCSRLYIYDLELRRW---EKCIE 227 D A+G + PE VYDL GK+ VR+ P +++YD + W Sbjct: 375 DLASGTSIALHHPEFIGKTS-VYDLQYAGGKLFVRVDPGPVMFVYDPDTASWIVNNNTAY 433 Query: 228 HVSGLSVSAPDSQGNVYFIKEDI--------LQRYALAAGVLTPTSLAMPEPAGDYGWLE 279 + G S +PD + Y E + L Y + G + + +G+++ Sbjct: 434 NARGFSPLSPDGEEVFYTYYETLPGGAQQWSLYSYDVRTGDYGSLGVDVKGAGVAFGYVQ 493 Query: 280 GHPLNPQGSCLAGVH-RDGTCWIYDPENDRHTVMDFMLQGQPVHLQSLAWGPEGKLYIGG 338 N G L G+ G + Y+ E + Q V L ++ +G++ G Sbjct: 494 LDQTNYPGWTLVGLAGNSGRAFYYNLETGLIETPELPFPAQFVELFNIGKSTDGQMLSSG 553 Query: 339 YFAGG-LASYDPATSEMISHRGIGQIEGMLAAHGIMYLGVYPKANIFAYDPNLEWNPG-- 395 + +GG + Y P +E + IGQ+EG + +G MYLGVYP+A IF YDP WN Sbjct: 554 FISGGGMGIYSPTRNETKHYPQIGQVEGFGSLNGKMYLGVYPRATIFEYDPAKPWNRTDP 613 Query: 396 SNPKLAFSLQE--EEQDRAFAWTLAGDE--LAIGTVPSYGRNGGALTLFHPVTGTREVFR 451 S P L + EQDR A +E L IG+ P G+ GGALT+++PVTGT +V R Sbjct: 614 SEPNNPLRLGQLGSEQDRPVAMLGVEEENLLYIGSYPIAGKTGGALTVYNPVTGTFDVKR 673 Query: 452 GLLPQQSIVSXXXXXXXXXXXXSVWGGLGIAPERKEASLMIWEVNGRRKVWEGVPVPGEQ 511 ++ SI S G E L I++ R E VPV G++ Sbjct: 674 DIISGHSINSLLYKNGKLFMATGAMTG-------GEGKLAIYDTASGRVELEQVPVAGKK 726 Query: 512 AISALALDDEGKVWGLTAGMLFRFNPVTLKTEQTIPVLPVDWKAMTHFWRGGCELLY-RE 570 A+++L +G +WG+ G LF ++P E+ + D + L + Sbjct: 727 AVTSLIWGPDGNIWGMALGSLFIYDP-----ERQEIIYSEDMFPAADYAHSNPRLTVGTD 781 Query: 571 GVLYGVAM----------NLLFKYDVRLNQLEV-LDEDARLLAVDGEGGLYFARTTALYR 619 G +YG + +FK D L + L+ +A LA D G LYF + L + Sbjct: 782 GNVYGTIFTGYVADHTYTSKMFKIDAASKSLSILLESNAEKLAQDDFGNLYFKYGSELMK 841 >C4EK00.1 C4EK00_STRRS Putative uncharacterized protein (Fragment) Length = 446 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/447 (32%), Positives = 209/447 (46%), Gaps = 28/447 (6%) Query: 194 DLNIVHGKMLVRITPC--SRLYIYDLELRRWEKCIEHVSGLSVSAPDSQGNVYFIKEDIL 251 D+N+ G + VR + +++D+ W +E GL VS PD +G VY +K L Sbjct: 1 DVNVAGGYLYVRYSDAFPGPAHVWDIAAGAWIDRLEAAHGLDVSPPDEEGRVYMVKAGEL 60 Query: 252 QRYALAAGVLTPTSLAMPEPAGD---YGWLE-GHPLNPQGSCLAGVHRDGTCWIYDPEND 307 RY + +TPT + + GW E G P P G + G+ G + Y+P+ Sbjct: 61 VRYDPRSRTVTPTGMPFTGRVANTRGIGWAELGLPDYP-GRSVVGLLWRGMMFRYNPQTG 119 Query: 308 RHTVMDFMLQGQPVHLQSLAWGPEGKLYIGGYFAGGLASYDPATSEMISHRGIGQIEGML 367 + + ++G+P+ + +L+ GP+G++Y GG+ GG A+ + T E Q E M Sbjct: 120 ARSFVQTAVRGEPIDVTALSEGPDGRMYAGGFLNGGFAALNAKTGEREEFHTFSQSEDMT 179 Query: 368 AAHGIMYLGVYPKANIFAYDPNLEWN-----------PGSNPKLAFSLQEEEQDRAFAWT 416 G +Y+G YP+A +++YDP L WN P NP F ++Q R A Sbjct: 180 THDGKLYVGAYPQARVYSYDPKLPWNSAEYSPSPEPGPADNPARLFDFAADKQIRPRATV 239 Query: 417 LAGDELAIGTVPSYGRNGGALTLFHPVTGT-REVFRGLLPQQSIVSXXXXXXXXXXXXSV 475 AG LA+GT+P G GG L L+ P G+ R R ++ QSIVS S+ Sbjct: 240 SAGRYLAVGTMPDLGHLGGVLALWDPREGSLRTAQRHVVKDQSIVSLAYRDGVVYGGTSI 299 Query: 476 WGGL-GIAPERKEASLMIWEVNGRRKVWEGVPVPGEQAISALALDDEGKVWGLTAGMLFR 534 G P + EA L W V R +WE PVPG+ A+ ALA DD G++WG+ G +F Sbjct: 300 HSGQSATPPTQTEARLFAWSVRENRLLWEITPVPGKPAVPALAFDDRGRLWGIAGGEVFA 359 Query: 535 FNPVTLKTEQTIPVLPVDWKAMTHFWRGGCELLYREGVLYGV-AMNLLFKYDVRLNQLEV 593 N K + + P + G R+ LYG A + LF D R + V Sbjct: 360 VNVHARKVVSRVTLSPSASAS------GQLVFSKRDRTLYGAHAGSSLFSLDPRSRRHAV 413 Query: 594 LDE-DARLLAVDGEGGLYFARTTALYR 619 L E LAV G +YFA LYR Sbjct: 414 LREGPVHHLAVHRSGDVYFAEGPQLYR 440 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,202,059,817 Number of extensions: 193606219 Number of successful extensions: 372953 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 372810 Number of HSP's successfully gapped: 19 Length of query: 630 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 488 Effective length of database: 1,722,912,073 Effective search space: 840781091624 Effective search space used: 840781091624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)