BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0010.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CAY9.1 A6CAY9_9PLAN Demethylmenaquinone methyltransferase 190 9e-47 A4AN25.1 A4AN25_9FLAO Demethylmenaquinone methyltransferase 172 2e-41 A8S1H0.1 A8S1H0_9CLOT Putative uncharacterized protein 166 1e-39 B1EPC8.1 B1EPC8_9ESCH Demethylmenaquinone methyltransferase 166 1e-39 C5EP61.1 C5EP61_9FIRM Demethylmenaquinone methyltransferase 165 2e-39 >A6CAY9.1 A6CAY9_9PLAN Demethylmenaquinone methyltransferase Length = 222 Score = 190 bits (482), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 92/212 (43%), Positives = 131/212 (61%) Query: 7 FDTMCKTLYAAVISDTLDLLGYRNQVMRENINPVDPSWVVAGRAKTVLSVDIHHLPEDPY 66 D M + L++A+I D LD LGY NQ R+ + P+ VV GR KT L D++H+ PY Sbjct: 11 LDMMRQHLHSAIICDALDALGYTNQSPRKELLPMTVESVVVGRCKTSLWADMYHVDPSPY 70 Query: 67 TKEIEAVDSVKPGEIVVGCTNESRQNGLWGELLSTASKIRGGRGAIVDGLIRDTAKILEL 126 E++AVDS+ E+ + + S ++G+WGELLSTA K RG GA++DG +RD ++ + Sbjct: 71 ELELKAVDSINADEVFIAAASGSMRSGIWGELLSTAVKHRGCAGAVIDGAVRDVRQMRSM 130 Query: 127 DFPVFATGTKPVDSQGRGIVIDYDIPVLCGGVLVHPGDVIFGDRDGVVVIPGAITGEVFA 186 FPV+A GT P DS+ R +ID D+PV GGV PGD++F D DG+ V+P A+ EV Sbjct: 131 QFPVWAVGTSPYDSKDRQRIIDVDVPVEIGGVYFSPGDLVFADVDGIAVVPQAVEAEVIQ 190 Query: 187 LATDKATRENHTRDELLAGFTLRQVYDKYGVL 218 A K EN RD + G + + + KYG+L Sbjct: 191 SAWKKVHEENTFRDSIKNGMSATEAFAKYGIL 222 >A4AN25.1 A4AN25_9FLAO Demethylmenaquinone methyltransferase Length = 231 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 132/226 (58%), Gaps = 10/226 (4%) Query: 2 NDQELFDTMCKTLYAAVISDTLDLLGYRNQVMRENINPVDPSWVVAGRAKTVLSVDIHH- 60 ND+ELF+ K L+ A++ D LD +GY +Q + NI P++ +VV GRA VL D+ Sbjct: 7 NDKELFEIAKKELFVALVGDILDKMGYLHQFLPPNIKPLNNDFVVIGRAMPVLEADVFEE 66 Query: 61 --------LPEDPYTKEIEAVDSVKPGEIVVGCTNESRQNGLWGELLSTASKIRGGRGAI 112 L + P+ EA+DS+K GE+ + C+ S LWG L+ST + G GA+ Sbjct: 67 VVENTNNPLMQKPFGIMFEALDSLKEGEVYI-CSGSSPNYALWGGLMSTRAMKLGAAGAV 125 Query: 113 VDGLIRDTAKILELDFPVFATGTKPVDSQGRGIVIDYDIPVLCGGVLVHPGDVIFGDRDG 172 V+G RDT +IL L++P F+ G D RG VIDY +P+ G+ +HPGDV++GD DG Sbjct: 126 VNGYSRDTKEILSLEYPTFSFGGYAQDQGPRGKVIDYRVPIEIAGIRIHPGDVVYGDVDG 185 Query: 173 VVVIPGAITGEVFALATDKATRENHTRDELLAGFTLRQVYDKYGVL 218 V+++P A E F A +KA E + L AG + ++K+G++ Sbjct: 186 VLIVPKAAVKEAFTGAIEKARGEQLVKKALQAGMSTVDAFEKFGIM 231 >A8S1H0.1 A8S1H0_9CLOT Putative uncharacterized protein Length = 229 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 131/225 (58%), Gaps = 9/225 (4%) Query: 2 NDQELFDTMCKTLYAAVISDTLDLLGYRNQVMRENINPVDPSWVVAGRAKTVLSVDIHHL 61 ND ELF M +TLY++VI D LD + Y +Q + I P+ + VVAGRA TVL D Sbjct: 6 NDDELFALMRETLYSSVIGDILDKMNYLHQFLPWRIQPMRENMVVAGRAMTVLEADALET 65 Query: 62 ---PEDPYTKE-----IEAVDSVKPGEIVVGCTNESRQNGLWGELLSTASKIRGGRGAIV 113 ++P ++ +EA+D +K E+ + CT S L GEL+ T KI G GA+V Sbjct: 66 VSEGQNPIMRQSFGLMLEALDDLKKNEVYI-CTGSSPTYALVGELMCTRMKILGAAGAVV 124 Query: 114 DGLIRDTAKILELDFPVFATGTKPVDSQGRGIVIDYDIPVLCGGVLVHPGDVIFGDRDGV 173 +G RDT IL+LDFP F+ G D RG VIDY +P+ GV ++PGD++FGD DGV Sbjct: 125 NGFHRDTNGILDLDFPCFSYGRYAQDQGPRGKVIDYRVPIDMEGVKINPGDIVFGDLDGV 184 Query: 174 VVIPGAITGEVFALATDKATRENHTRDELLAGFTLRQVYDKYGVL 218 +VIP I EV A +KAT E + + G + +DKYG++ Sbjct: 185 LVIPKEIEEEVIVRAVEKATGEKMVAEAIKNGMAAKASFDKYGIM 229 >B1EPC8.1 B1EPC8_9ESCH Demethylmenaquinone methyltransferase Length = 228 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 134/226 (59%), Gaps = 10/226 (4%) Query: 2 NDQELFDTMCKTLYAAVISDTLDLLGYRNQVMRENINPVDPSWVVAGRAKTVLSVDIHH- 60 +D ELF M L+ AV+ D LD LGY +Q + I P++ + VVAGRA VL D++ Sbjct: 4 SDNELFTLMRTRLFTAVVGDILDTLGYMHQFVSPAIKPLEVNMVVAGRAMPVLESDVYET 63 Query: 61 --------LPEDPYTKEIEAVDSVKPGEIVVGCTNESRQNGLWGELLSTASKIRGGRGAI 112 + E P+ EA+D++K ++ + T S + LWG L+ST + GA+ Sbjct: 64 KSSSGKTAIGEKPFGIMFEALDALKENDVYI-TTGSSLRYVLWGGLMSTRAMHLKAAGAV 122 Query: 113 VDGLIRDTAKILELDFPVFATGTKPVDSQGRGIVIDYDIPVLCGGVLVHPGDVIFGDRDG 172 +DG RD+A+I+EL FP F GT D RG VID+++P+ GV V+PGD++FGDRDG Sbjct: 123 LDGYARDSAEIIELHFPTFCHGTYAQDQGPRGKVIDFNVPIEFHGVQVNPGDIVFGDRDG 182 Query: 173 VVVIPGAITGEVFALATDKATRENHTRDELLAGFTLRQVYDKYGVL 218 +++IP ++ EV LA +K T E+ R + G + Q ++ +GV+ Sbjct: 183 LLIIPQSVEKEVITLALEKVTTESAVRKAISGGMSTVQAFETFGVM 228 >C5EP61.1 C5EP61_9FIRM Demethylmenaquinone methyltransferase Length = 230 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 128/225 (56%), Gaps = 9/225 (4%) Query: 2 NDQELFDTMCKTLYAAVISDTLDLLGYRNQVMRENINPVDPSWVVAGRAKTVLSVDIH-- 59 +D+ELF M + LY+AVI D LD + Y +Q + I P+D VVAGRA TVL D Sbjct: 7 DDKELFGKMREVLYSAVIGDILDKMHYYHQFLPWRIQPLDKGMVVAGRAMTVLEADAFED 66 Query: 60 ----HLP--EDPYTKEIEAVDSVKPGEIVVGCTNESRQNGLWGELLSTASKIRGGRGAIV 113 H P P+ +EA+D +K E+ + CT S L GEL+ T +I G GA+V Sbjct: 67 VSDSHNPVMNKPFGLMLEALDDIKEDEVYI-CTGASPDYALVGELMCTRMQILGAAGAVV 125 Query: 114 DGLIRDTAKILELDFPVFATGTKPVDSQGRGIVIDYDIPVLCGGVLVHPGDVIFGDRDGV 173 +G RDT I EL FP F+ G D RG VIDY +P+ GV + PGD+IFGD DGV Sbjct: 126 NGFHRDTKGIEELGFPCFSYGRYAQDQAPRGKVIDYRVPIEIEGVRIRPGDIIFGDMDGV 185 Query: 174 VVIPGAITGEVFALATDKATRENHTRDELLAGFTLRQVYDKYGVL 218 VVIP I GEV + +KAT E + + G ++ ++ YG++ Sbjct: 186 VVIPREIEGEVIRQSYEKATGEKTVGEAIKKGMPAKEAFETYGIM 230 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,377,775,819 Number of extensions: 59232218 Number of successful extensions: 133930 Number of sequences better than 1.0e-05: 747 Number of HSP's gapped: 133635 Number of HSP's successfully gapped: 753 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)