BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0005.p (356 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K463.1 B3K463_9BACI Dihydrodipicolinate synthetase 512 e-143 C2FVK8.1 C2FVK8_9SPHI Dihydrodipicolinate synthetase 469 e-130 B7R6B4.1 B7R6B4_9THEO Putative uncharacterized protein 457 e-127 C1Z146.1 C1Z146_PEDHE Dihydrodipicolinate synthase/N-acetylneura... 446 e-123 Q2BFB8.1 Q2BFB8_9BACI Putative uncharacterized protein 438 e-121 >B3K463.1 B3K463_9BACI Dihydrodipicolinate synthetase Length = 360 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 249/348 (71%), Positives = 276/348 (79%) Query: 8 LTPELNEALHEGLAIPAHPLALTAGRKLDERRQRALTRYYLSSGAGGIAVAVHSTQFEIR 67 L PE +ALHEGL IPAHPLAL RKLDERRQRALTRYY +SGAGG+AV VHSTQFEIR Sbjct: 11 LAPEKLKALHEGLVIPAHPLALDENRKLDERRQRALTRYYAASGAGGVAVGVHSTQFEIR 70 Query: 68 NPEIGLLEPVLRLAAEEVERAGVDRPFLKVAGICGGMEQAVLEAQLAASLGYEAGLLSMG 127 + I L EPVLRLAAEEV RA +DRPFL VAG+CG EQAV E ++A LGY+A LLSMG Sbjct: 71 DKGIDLYEPVLRLAAEEVRRAELDRPFLMVAGVCGPTEQAVEETEIARRLGYDAVLLSMG 130 Query: 128 GLQHCSEEELLERTRRVADVIPVFGFYLQPSVGGRILSFDFWREFAEIEGVIAIKMAPFN 187 GL SEE++L+RT +A +PV GFYLQPSVGG I SF+FWR FAEI ++AIKMAPFN Sbjct: 131 GLSGWSEEDILKRTEEIAQRMPVIGFYLQPSVGGNIFSFEFWRAFAEIPNIVAIKMAPFN 190 Query: 188 RYQSLDVVRAVMESSRCGEIALYTGNDDNIVTDLLTTYRFMVNGEPVEKKIVGGLLGHWA 247 RYQ++DVVRAV SSR +IALYTGNDDNIV DLLTTYRF V+G PV K IVGGLLGHWA Sbjct: 191 RYQTIDVVRAVCYSSRRDDIALYTGNDDNIVNDLLTTYRFQVDGTPVAKPIVGGLLGHWA 250 Query: 248 VWTSKAVQLLSEIKKIRNDASLAASWLTLGAEVTDSNAALFDPAHNFHGCIPGIHEALRR 307 VWT KAV+LL EIK+ R A WLT E+TDSNAA FDPAH F GCIPGIHE LRR Sbjct: 251 VWTRKAVELLEEIKEARKQEQFAKEWLTRNVEITDSNAAFFDPAHQFAGCIPGIHEVLRR 310 Query: 308 QGLLEGLWCLNPEEQLSPGQLEEISRVSRDYPHLVDNDFVAGHLEEWL 355 QGLL+G WCLNP E LSPGQ EEI RV RDYPHL D+DF+ HLE WL Sbjct: 311 QGLLQGTWCLNPHETLSPGQSEEIDRVYRDYPHLNDDDFIREHLESWL 358 >C2FVK8.1 C2FVK8_9SPHI Dihydrodipicolinate synthetase Length = 352 Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust. Identities = 225/350 (64%), Positives = 272/350 (77%), Gaps = 2/350 (0%) Query: 6 KPLTPELNEALHEGLAIPAHPLALTAGRKLDERRQRALTRYYLSSGAGGIAVAVHSTQFE 65 K L P L + LHEG IPAHPLAL R +DE QR L+RYY++SGAGGIAVAVHSTQFE Sbjct: 2 KKLDPILKQLLHEGTVIPAHPLALHEDRSIDEEGQRLLSRYYMASGAGGIAVAVHSTQFE 61 Query: 66 IRNPEIGLLEPVLRLAAEEVERAGVDRPFLKVAGICGGMEQAVLEAQLAASLGYEAGLLS 125 IR+P+I L E VL+ AAEEV++A +DRPF+KVAGICG EQAV EA+ A Y+ GLLS Sbjct: 62 IRDPKINLFETVLQWAAEEVQKANLDRPFIKVAGICGPTEQAVREAETAVRYNYDIGLLS 121 Query: 126 MGGLQHCSEEELLERTRRVADVIPVFGFYLQPSVGGRILSFDFWREFAEIEGVIAIKMAP 185 MGGLQ +EE++LER R+VA+++PVFGFYLQPSVGGRI S+ FW+ F EI+ V AIK A Sbjct: 122 MGGLQDWTEEQILERVRKVAEIMPVFGFYLQPSVGGRIFSYAFWQAFVEIDNVEAIKCAS 181 Query: 186 FNRYQSLDVVRAVMESSRCGEIALYTGNDDNIVTDLLTTYRFMVNGEPVEKKIVGGLLGH 245 FNRYQ+LDV+RA+ SSR +IA+YTGNDDNI+ DLL+TYRF VNGE VE GGLLGH Sbjct: 182 FNRYQTLDVMRALANSSRRNDIAMYTGNDDNIIADLLSTYRFPVNGESVEINFKGGLLGH 241 Query: 246 WAVWTSKAVQLLSEIKKIRNDAS--LAASWLTLGAEVTDSNAALFDPAHNFHGCIPGIHE 303 WAVWT KAV L+ +IK+ R + A L+ EVTD+NAA FDPAH+FHGCIPGIHE Sbjct: 242 WAVWTQKAVDLMQKIKEYRKHKTNEKADDLLSRNIEVTDANAAFFDPAHHFHGCIPGIHE 301 Query: 304 ALRRQGLLEGLWCLNPEEQLSPGQLEEISRVSRDYPHLVDNDFVAGHLEE 353 LRRQGL++G+WCLNP E+LSPGQ EEI R+ +YPHL D+ FV L++ Sbjct: 302 VLRRQGLMKGIWCLNPNEKLSPGQKEEIDRIYIEYPHLNDDVFVQEFLKK 351 >B7R6B4.1 B7R6B4_9THEO Putative uncharacterized protein Length = 353 Score = 457 bits (1175), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/352 (65%), Positives = 271/352 (76%), Gaps = 2/352 (0%) Query: 4 TRKPLTPELNEALHEGLAIPAHPLALTAGRKLDERRQRALTRYYLSSGAGGIAVAVHSTQ 63 R L PE+ + L EG IPAHPLALT RKLDE+RQRALTRYY+++GAGGIAV VH+TQ Sbjct: 3 NRMLLPPEIYKLLQEGTVIPAHPLALTEERKLDEKRQRALTRYYIAAGAGGIAVGVHTTQ 62 Query: 64 FEIRNPEIGLLEPVLRLAAEEVERAGVDRPFLKVAGICGGMEQAVLEAQLAASLGYEAGL 123 FEIR + L E VL +AAEEVE+A + RPF+KVAGI G EQA+ EA++A GY GL Sbjct: 63 FEIR--QHNLYEKVLEIAAEEVEKANLKRPFIKVAGIIGPTEQALKEAEIAVKYGYHLGL 120 Query: 124 LSMGGLQHCSEEELLERTRRVADVIPVFGFYLQPSVGGRILSFDFWREFAEIEGVIAIKM 183 LSMGGL SEE+L++RT V VIPVFGFYLQP+VGGR S++FWR F +I VIAIK+ Sbjct: 121 LSMGGLDDWSEEDLIKRTEEVGKVIPVFGFYLQPAVGGRKFSYNFWRRFVDIPYVIAIKI 180 Query: 184 APFNRYQSLDVVRAVMESSRCGEIALYTGNDDNIVTDLLTTYRFMVNGEPVEKKIVGGLL 243 APFNRY +LDVVRAV ES R EIALYTGNDDNIV DLLT YRF +NG+ VEK+I GGLL Sbjct: 181 APFNRYYTLDVVRAVCESDRRDEIALYTGNDDNIVIDLLTKYRFNINGKIVEKRIAGGLL 240 Query: 244 GHWAVWTSKAVQLLSEIKKIRNDASLAASWLTLGAEVTDSNAALFDPAHNFHGCIPGIHE 303 GHWAVWT KAV+L EIKK+R ++ + LT E+TD NA FD ++NFHG I GIHE Sbjct: 241 GHWAVWTKKAVELFEEIKKVREKDTIPSELLTKAIEITDCNAVFFDASNNFHGVIAGIHE 300 Query: 304 ALRRQGLLEGLWCLNPEEQLSPGQLEEISRVSRDYPHLVDNDFVAGHLEEWL 355 LRRQGL++G WCLNPEE LSPGQ EEI RV + YPHL D+DFV H+EEWL Sbjct: 301 VLRRQGLMQGTWCLNPEEDLSPGQKEEIDRVYKAYPHLNDDDFVRKHIEEWL 352 >C1Z146.1 C1Z146_PEDHE Dihydrodipicolinate synthase/N-acetylneuraminate lyase Length = 353 Score = 446 bits (1146), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/347 (65%), Positives = 268/347 (77%), Gaps = 1/347 (0%) Query: 6 KPLTPELNEALHEGLAIPAHPLALTAGRKLDERRQRALTRYYLSSGAGGIAVAVHSTQFE 65 + L PEL + L +G IPAHPLALT RKLDE+ QR L+RYY+++GAGGIAV VHSTQFE Sbjct: 3 QQLKPELKQFLDKGTVIPAHPLALTEERKLDEQGQRLLSRYYMAAGAGGIAVGVHSTQFE 62 Query: 66 IRNPEIGLLEPVLRLAAEEVERAGVDRPFLKVAGICGGMEQAVLEAQLAASLGYEAGLLS 125 IR+P+I L E VL+LAAEE+E+A + RPF+K+AGICG QAV EA++A Y+ GLLS Sbjct: 63 IRDPKINLYETVLKLAAEEIEKAALKRPFIKIAGICGPTAQAVAEAKVAVKHSYDMGLLS 122 Query: 126 MGGLQHCSEEELLERTRRVADVIPVFGFYLQPSVGGRILSFDFWREFAEIEGVIAIKMAP 185 MGGLQ +E E+L R VA V+PVFGFYLQPSVGGRI S+DFW FAEIE V AIK+A Sbjct: 123 MGGLQGWTETEILARVEAVAAVMPVFGFYLQPSVGGRIFSYDFWLRFAEIENVEAIKVAS 182 Query: 186 FNRYQSLDVVRAVMESSRCGEIALYTGNDDNIVTDLLTTYRFMVNGEPVEKKIVGGLLGH 245 FNRYQ+LDVVRAV SSR +IALYTGNDDNIV DLLT+Y+F VNGE EK +GGLLGH Sbjct: 183 FNRYQTLDVVRAVCHSSRREKIALYTGNDDNIVADLLTSYKFEVNGETFEKGFIGGLLGH 242 Query: 246 WAVWTSKAVQLLSEIKKIRNDASLA-ASWLTLGAEVTDSNAALFDPAHNFHGCIPGIHEA 304 WAVWT+ AVQL EIK + + S + LT G +VTD NAA+FDP+H FHGCIPGIHE Sbjct: 243 WAVWTNAAVQLFEEIKACKANGSKGLEALLTKGVQVTDMNAAIFDPSHAFHGCIPGIHEV 302 Query: 305 LRRQGLLEGLWCLNPEEQLSPGQLEEISRVSRDYPHLVDNDFVAGHL 351 LR+QGL++G WCLNP+EQLS GQ EEISRV YP L D+ FV L Sbjct: 303 LRQQGLMKGTWCLNPKEQLSDGQAEEISRVCAAYPKLTDDGFVKKFL 349 >Q2BFB8.1 Q2BFB8_9BACI Putative uncharacterized protein Length = 353 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/341 (62%), Positives = 257/341 (75%) Query: 8 LTPELNEALHEGLAIPAHPLALTAGRKLDERRQRALTRYYLSSGAGGIAVAVHSTQFEIR 67 L ++ L EG IPAHPLAL R LDE QR LT YY+ SGAGG+AV VH+TQFEIR Sbjct: 2 LDEQVKRLLFEGTVIPAHPLALNEDRTLDEDAQRRLTNYYMDSGAGGVAVGVHTTQFEIR 61 Query: 68 NPEIGLLEPVLRLAAEEVERAGVDRPFLKVAGICGGMEQAVLEAQLAASLGYEAGLLSMG 127 P GL E VLRLA EE+++ F+K+AG+CG + QA+ E++ A LGY+ LLS G Sbjct: 62 APRFGLYERVLRLAVEEIDKRKQKEGFIKIAGVCGHINQALEESKTAKDLGYDMVLLSNG 121 Query: 128 GLQHCSEEELLERTRRVADVIPVFGFYLQPSVGGRILSFDFWREFAEIEGVIAIKMAPFN 187 GL SE ELLERT++VA+V+PVFGFYLQPSVGGR S++FW+EF EI + AIKMAPFN Sbjct: 122 GLSGLSEAELLERTQKVAEVMPVFGFYLQPSVGGRAFSYEFWKEFTEIPNIHAIKMAPFN 181 Query: 188 RYQSLDVVRAVMESSRCGEIALYTGNDDNIVTDLLTTYRFMVNGEPVEKKIVGGLLGHWA 247 RYQ+LDVVRAV SSR +IALYTGNDDNI+ DLLT Y F VNG+ V K+IVGGLLG WA Sbjct: 182 RYQTLDVVRAVCHSSRGSQIALYTGNDDNIINDLLTEYEFNVNGKMVRKQIVGGLLGQWA 241 Query: 248 VWTSKAVQLLSEIKKIRNDASLAASWLTLGAEVTDSNAALFDPAHNFHGCIPGIHEALRR 307 VWT KAVQ+L E+K R+ + +S LTLG ++TD+NAALFD A+ F GCI GI+E L R Sbjct: 242 VWTYKAVQMLDEVKAARSRREVPSSLLTLGQQLTDANAALFDSANGFKGCITGINEVLAR 301 Query: 308 QGLLEGLWCLNPEEQLSPGQLEEISRVSRDYPHLVDNDFVA 348 QGLL+G WCL +E+LS GQ EEI RV RDYPHL D+DFV+ Sbjct: 302 QGLLKGNWCLLDKERLSSGQSEEIDRVCRDYPHLTDDDFVS 342 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,190,194,260 Number of extensions: 90871261 Number of successful extensions: 205815 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 205774 Number of HSP's successfully gapped: 23 Length of query: 356 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 219 Effective length of database: 1,770,017,148 Effective search space: 387633755412 Effective search space used: 387633755412 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)