BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0056.p (201 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEA9.1 B3KEA9_9BACI 2'-5' RNA ligase 147 4e-34 B4BPV9.1 B4BPV9_9BACI 2'-5' RNA ligase 110 7e-23 Q2B4M3.1 Q2B4M3_9BACI Putative uncharacterized protein 110 8e-23 A4IRX4.1 A4IRX4_GEOTN MalA gene products, putative 108 3e-22 B1DDH6.1 B1DDH6_9BACL 2'-5' RNA ligase 106 1e-21 >B3KEA9.1 B3KEA9_9BACI 2'-5' RNA ligase Length = 185 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 10/185 (5%) Query: 11 ERLFIALKLPFALCEKLEKERSVLSGKLNFAKWTHSEDYHITLQFLGDTPKRSIPGLLEA 70 +RLF+A++LP + +++ L NF KW H +DYHITLQFLGDTP I L A Sbjct: 2 DRLFVAVRLPSEVSSRIQDWTETLRKHANFKKWVHPQDYHITLQFLGDTPSHRIAELTGA 61 Query: 71 LKEIPAACQPFQLQLSEWGVFGRPESPKVLWAGVSGEMEKLKDLQKRVISVTRPLGFIPE 130 L+E+ +PF+L L + GVFG SP++LWAGV G++ L +LQ+ V+S GF+PE Sbjct: 62 LQEVAKERKPFKLSLYDAGVFGASGSPRILWAGVGGDLNALAELQQSVVSRMESFGFVPE 121 Query: 131 TREFKPHLTLARKYRNELPFSXXXXXXXXXXXXXXXXKTGIADWTVDGFVVYATRMHAIP 190 R F+PH+T+ RK++ FS W V V++ T + A P Sbjct: 122 ERPFRPHITVGRKFQGNQTFSLDVIGKGPEPI----------QWDVLEMVLFRTNLQASP 171 Query: 191 MYEMI 195 MYE + Sbjct: 172 MYETV 176 >B4BPV9.1 B4BPV9_9BACI 2'-5' RNA ligase Length = 192 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 10/189 (5%) Query: 10 RERLFIALKLPFALCEKLEKERSVLSGKLNFAKWTHSEDYHITLQFLGDTPKRSIPGLLE 69 R FIA+ L + + + ++ L F W H +DYHITL FLGD P + + L E Sbjct: 3 RNHYFIAVPLTAEAKQAIARFAGDMASSLPFRTWVHEQDYHITLAFLGDVPPQKMDPLCE 62 Query: 70 ALKEIPAACQPFQLQLSEWGVFGRPESPKVLWAGVSGEMEKLKDLQKRVISVTRPLGFIP 129 + A PF LQL G FG +P++ W GV E E L L++ V LGF Sbjct: 63 KVAAAVARYAPFSLQLDGLGTFGERTAPRIFWQGVKAE-ETLNALRRDVYEACLTLGFSL 121 Query: 130 ETREFKPHLTLARKYRNELPFSXXXXXXXXXXXXXXXXKTGIADWTVDGFVVYATRMHAI 189 + R F PH+T+ARK++ PF A ++V V+Y T MH Sbjct: 122 DRRPFAPHITIARKWQGAEPFK---------PEMLGMLPAASAVFSVPEIVLYRTNMHQT 172 Query: 190 PMYEMIEKF 198 P YE+I F Sbjct: 173 PKYEVIASF 181 >Q2B4M3.1 Q2B4M3_9BACI Putative uncharacterized protein Length = 185 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 8/187 (4%) Query: 14 FIALKLPFALCEKLEKERSVLSGKLNFAKWTHSEDYHITLQFLGDTPKRSIPGLLEALKE 73 F A++LP EKL+ + +G L F KW H +DYHITL FLG+ K + +++ Sbjct: 6 FFAVRLPDDAKEKLKLKCEAAAGMLEFQKWVHYQDYHITLAFLGNAGKDQLQHAARLVRK 65 Query: 74 IPAACQPFQLQLSEWGVFGRPESPKVLWAGVSGEMEKLKDLQKRVISVTRPLGFIPETRE 133 + F L S +GVFG+P+ P++ W+ + + +L +++K+V + GF ETR Sbjct: 66 ALEEEEAFSLSTSRFGVFGKPDQPRIFWSDTAAQ-PRLAEVRKKVFDACKEAGFQLETRP 124 Query: 134 FKPHLTLARKYRNELPFSXXXXXXXXXXXXXXXXKTGIADWTVDGFVVYATRMHAIPMYE 193 FKPH+TLARK+ PF T + V+Y T M P YE Sbjct: 125 FKPHITLARKWAGSSPFEPDLLGNESVL-------TETISFPAAEVVLYQTHMDRSPKYE 177 Query: 194 MIEKFTF 200 IE +T Sbjct: 178 AIEVYTL 184 >A4IRX4.1 A4IRX4_GEOTN MalA gene products, putative Length = 192 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 89/189 (47%), Gaps = 10/189 (5%) Query: 10 RERLFIALKLPFALCEKLEKERSVLSGKLNFAKWTHSEDYHITLQFLGDTPKRSIPGLLE 69 R FIA+ L + + + ++ L F W H +DYHITL FLGD P + + L E Sbjct: 3 RNHYFIAVPLTAEAKQAIARFAGDMASSLPFRTWVHEQDYHITLAFLGDVPPQKMDPLCE 62 Query: 70 ALKEIPAACQPFQLQLSEWGVFGRPESPKVLWAGVSGEMEKLKDLQKRVISVTRPLGFIP 129 + A PF LQL G FG +P++ W GV E E L L++ V LGF Sbjct: 63 KVAAAAARYAPFSLQLDGLGTFGERTAPRIFWQGVKAE-ETLNALRRDVYEACLTLGFSL 121 Query: 130 ETREFKPHLTLARKYRNELPFSXXXXXXXXXXXXXXXXKTGIADWTVDGFVVYATRMHAI 189 + R F PH+T+ARK++ PF A ++V V+Y T MH Sbjct: 122 DRRPFAPHITIARKWQGAEPFK---------PEMLGMLPAASAVFSVPEIVLYRTNMHQT 172 Query: 190 PMYEMIEKF 198 P YE+I F Sbjct: 173 PKYEVIASF 181 >B1DDH6.1 B1DDH6_9BACL 2'-5' RNA ligase Length = 192 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 6/190 (3%) Query: 12 RLFIALKLPFALCEKLEKERSVLSGKLNFAKWTHSEDYHITLQFLGDTPKRSIPGLLEAL 71 R+F A+ +P + ++ +L+F KW D HITL F+GD P SIP + A+ Sbjct: 6 RIFTAISIPANITGQIVSHLPDWKNQLSFRKWVDPRDLHITLHFIGDMPVSSIPTIQAAM 65 Query: 72 KEIPAACQPFQLQLSEWGVFGRPESPKVLWAGVSG-EMEKLKDLQKRVISVTRPLGFIPE 130 +E + F L+LS+ FGR E P VLW G+ E L Q S+ +G+ PE Sbjct: 66 QETASRSSSFSLELSKLDCFGREERPSVLWLGIKQLPAELLGLHQLLGQSLHSGIGYSPE 125 Query: 131 TREFKPHLTLARKYRNELPFSXXXXXXXXXXXXXXXXKTGIADWTVDGFVVYATRMHAIP 190 TR ++PH+TLARKY + P + + + G +Y TR+ P Sbjct: 126 TRPYRPHVTLARKYSADEPCTAGKLEELSSPLLQHQTA-----FDITGITLYRTRLGERP 180 Query: 191 MYEMIEKFTF 200 MYE I F Sbjct: 181 MYEPIASAQF 190 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,115,561,461 Number of extensions: 41577672 Number of successful extensions: 84990 Number of sequences better than 1.0e-05: 368 Number of HSP's gapped: 84695 Number of HSP's successfully gapped: 368 Length of query: 201 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 72 Effective length of database: 1,845,385,268 Effective search space: 132867739296 Effective search space used: 132867739296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)