BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0055.p
         (297 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEA8.1 B3KEA8_9BACI Cell wall hydrolase SleB                        187   1e-45
O31685.1 YKVT_BACSU Uncharacterized protein ykvT                      103   1e-20
A6TT19.1 A6TT19_ALKMQ Cell wall hydrolase, SleB                       102   3e-20
A8MF38.1 A8MF38_ALKOO Cell wall hydrolase SleB                        102   5e-20
B2TIM8.1 B2TIM8_CLOBB Spore-cortex-lytic enzyme, sleb                  99   5e-19

>B3KEA8.1 B3KEA8_9BACI Cell wall hydrolase SleB
          Length = 288

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 102/122 (83%)

Query: 139 TVITKKTAIQQHPPTQLFFSRTKLLSQDQRDQATWTYAVSEGDLLLLQKIVMAEAEGEPY 198
           T + K  A    PPT LFF+RT  L+QDQ+D+ATWTY +S  +LLLLQKIVMAEAEGEPY
Sbjct: 140 THVVKSKAESLSPPTTLFFTRTNTLTQDQKDKATWTYDLSAEELLLLQKIVMAEAEGEPY 199

Query: 199 QGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSPVANGRLKRVKPNADSIKAVTAALSG 258
           +GKVAVANVVLNRLRSANFPDTI DVIYQK QFSPVANGRLKRV+PN ++IK+V AAL G
Sbjct: 200 EGKVAVANVVLNRLRSANFPDTITDVIYQKHQFSPVANGRLKRVQPNEETIKSVNAALHG 259

Query: 259 IK 260
            K
Sbjct: 260 PK 261


>O31685.1 YKVT_BACSU Uncharacterized protein ykvT
          Length = 208

 Score =  103 bits (258), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 174 TYAVSEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSP 233
           TY  SE +LL   ++V AEA+GE Y+GKVAVA+VVLNR     FPDTI  VIYQK+ F P
Sbjct: 90  TYTQSEKELL--SRLVHAEAKGESYKGKVAVASVVLNRTEKKGFPDTIRGVIYQKNAFEP 147

Query: 234 VANGRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNH 293
           VANG + + KP+ +SI+A   ALS  K    D  FF + K A D  +  SR+  + IG H
Sbjct: 148 VANGSINQ-KPDKESIEAAEEALSS-KNRETDAIFFYNPKTASDNWI-RSRKIVEKIGRH 204

Query: 294 TF 295
            F
Sbjct: 205 VF 206


>A6TT19.1 A6TT19_ALKMQ Cell wall hydrolase, SleB
          Length = 327

 Score =  102 bits (255), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 6/122 (4%)

Query: 179 EGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQK----SQFSPV 234
           E D+  L +I+ AEA+GE YQGKVAV NV++NR+   NFP++I+ V++ +    +QFSPV
Sbjct: 207 EDDMYWLSRIIHAEAQGESYQGKVAVGNVIMNRVGDGNFPNSIYGVVFDRQHGYTQFSPV 266

Query: 235 ANGRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNHT 294
            +G +   KP+ DS++A    L G + V D  Y FL+ + A +  +  +R++  TIG H 
Sbjct: 267 LDGSIHN-KPHQDSVRAAREVLDGARPVGDALY-FLNPRKATNFWIVQNRKHMMTIGLHD 324

Query: 295 FY 296
           FY
Sbjct: 325 FY 326


>A8MF38.1 A8MF38_ALKOO Cell wall hydrolase SleB
          Length = 330

 Score =  102 bits (253), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 80/120 (66%), Gaps = 6/120 (5%)

Query: 181 DLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQK----SQFSPVAN 236
           DL  L +I+ AEA+GE Y+GKVAV NV++NR++S+ FP+TI  V++ K    +QFSPV +
Sbjct: 212 DLYWLSRIIHAEAQGESYEGKVAVGNVIMNRVKSSLFPNTIKGVVFDKQNGYTQFSPVLD 271

Query: 237 GRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNHTFY 296
           G +    P++DSI A  A L+G + V D  Y FL+ + + +  +  +R++ KTIG H FY
Sbjct: 272 GSIYN-SPDSDSINAANAVLNGERPVGDALY-FLNPRKSTNFWIVQNRKHMKTIGLHDFY 329


>B2TIM8.1 B2TIM8_CLOBB Spore-cortex-lytic enzyme, sleb
          Length = 209

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 80/122 (65%), Gaps = 3/122 (2%)

Query: 177 VSEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSPVAN 236
           ++E D+ L+ K+V AE+ GEPY GKVAVA+VVLNR+ + +FP++I +VI+QK+ FS V N
Sbjct: 87  ITENDIELMAKLVYAESIGEPYDGKVAVASVVLNRVINPSFPNSIKEVIFQKNAFSCVKN 146

Query: 237 GRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHS-RQYAKTIGNHTF 295
           G +K   PN     AV  A+ G    T++  FF +   A    +H + +Q  KTIG+HTF
Sbjct: 147 GDIKAT-PNQTCYNAVYDAIRGYDP-TNEALFFYNPSTATCAWMHQTQKQDMKTIGHHTF 204

Query: 296 YK 297
           +K
Sbjct: 205 FK 206


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,446,503,897
Number of extensions: 47293325
Number of successful extensions: 142846
Number of sequences better than 1.0e-05: 396
Number of HSP's gapped: 142723
Number of HSP's successfully gapped: 396
Length of query: 297
Length of database: 3,060,696,203
Length adjustment: 135
Effective length of query: 162
Effective length of database: 1,788,859,178
Effective search space: 289795186836
Effective search space used: 289795186836
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)