BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0052.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KEA5.1 B3KEA5_9BACI Regulatory protein TetR 251 2e-65 C2W4W4.1 C2W4W4_BACCE Putative uncharacterized protein 193 7e-48 C2Q8J2.1 C2Q8J2_BACCE Putative uncharacterized protein 190 8e-47 A9VIA4.1 A9VIA4_BACWK Transcriptional regulator, TetR family 189 9e-47 C2ZKV5.1 C2ZKV5_BACCE Putative uncharacterized protein 189 9e-47 >B3KEA5.1 B3KEA5_9BACI Regulatory protein TetR Length = 193 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 118/175 (67%), Positives = 149/175 (85%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 +KSF+LFGYKATTM+QVAKIANVGKGTIYTFFTNK++LFDEIL IM+MK +AEREI++ Sbjct: 15 SKSFALFGYKATTMEQVAKIANVGKGTIYTFFTNKDELFDEILLSAIMEMKRLAEREIRK 74 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 +R FFDNL+ VLDALLEFRSEHELFIKLSQE RD GTP+A+EGL K+EN ++ YL+ VE Sbjct: 75 DRDFFDNLYRVLDALLEFRSEHELFIKLSQEVRDIGTPKAHEGLTKVENGIVGYLKGIVE 134 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGL 203 +AI+ GE+KP + ++VS VM +LY+ LT + + +H PL+KEQIK Y +FLA+GL Sbjct: 135 NAISIGEIKPLDAQVVSFVMLKLYVALTTDFNQLHKPLSKEQIKEYMMVFLADGL 189 >C2W4W4.1 C2W4W4_BACCE Putative uncharacterized protein Length = 190 Score = 193 bits (491), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 91/176 (51%), Positives = 127/176 (72%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I++MK +A+ I Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLIVEMKQVAKEAIHS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + EG+ ++E ++ ++ +E Sbjct: 74 DVSFFENVHKALYSILEFRKEHQLMIKLIQEERDMGTKEVQEGMQQVETEIVSVIQSYLE 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 VAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHKPLDKERIAELFELYLLKGLS 189 >C2Q8J2.1 C2Q8J2_BACCE Putative uncharacterized protein Length = 190 Score = 190 bits (482), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 126/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ +E Sbjct: 74 DVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLE 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELFELYLLKGLS 189 >A9VIA4.1 A9VIA4_BACWK Transcriptional regulator, TetR family Length = 190 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 126/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ +E Sbjct: 74 DISFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLE 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKISELFELYLLKGLS 189 >C2ZKV5.1 C2ZKV5_BACCE Putative uncharacterized protein Length = 190 Score = 189 bits (481), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 90/176 (51%), Positives = 126/176 (71%) Query: 29 TKSFSLFGYKATTMDQVAKIANVGKGTIYTFFTNKEQLFDEILRDVIMDMKLIAEREIKR 88 TKSFS FGYKATTMDQVAK+ANVGKGTIYTFF NKE+LF EI+ ++I +MK +AE I+ Sbjct: 14 TKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLITEMKQVAENAIRS 73 Query: 89 ERSFFDNLHHVLDALLEFRSEHELFIKLSQESRDFGTPQANEGLDKIENVVLEYLEREVE 148 + SFF+N+H L ++LEFR EH+L IKL QE RD GT + E + +++ ++ ++ +E Sbjct: 74 DISFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQVDVEIVSVIQSYLE 133 Query: 149 HAITQGEVKPCEPKIVSLVMFRLYIVLTAELSSVHVPLTKEQIKSYFHLFLAEGLA 204 AI +GE+ C+P+I + +M RLY+ L + H PL KE+I F L+L +GL+ Sbjct: 134 IAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKISELFELYLLKGLS 189 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,010,545,803 Number of extensions: 36834677 Number of successful extensions: 113737 Number of sequences better than 1.0e-05: 206 Number of HSP's gapped: 114133 Number of HSP's successfully gapped: 206 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)