BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0048.p (308 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE74.1 B3KE74_9BACI ABC transporter related 410 e-113 B1D5Q4.1 B1D5Q4_9BACL ABC transporter related 405 e-111 B1DBQ2.1 B1DBQ2_9BACL ABC transporter related 366 1e-99 C5D621.1 C5D621_9BACI ABC transporter related 359 2e-97 P54592.1 YHCH_BACSU Uncharacterized ABC transporter ATP-binding ... 351 5e-95 >B3KE74.1 B3KE74_9BACI ABC transporter related Length = 305 Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust. Identities = 210/298 (70%), Positives = 250/298 (83%), Gaps = 3/298 (1%) Query: 9 KPVASLMGVTKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISRGDI 68 +P+ L+GVTKKI SK LV D+T DI PGQIFGFLGPNGAGKTTTIRMMVGL+SI++GDI Sbjct: 4 EPLVRLLGVTKKISSKVLVDDVTFDIAPGQIFGFLGPNGAGKTTTIRMMVGLMSITQGDI 63 Query: 69 LICGRSIKDHFEEAVANIGAIVENPEMYKFLTGYQNLRQYARMVPGVNKKRIHEVVELVG 128 I G SI+ ++E+A A IGAIVENPEMYKFL+GY NL+ +ARM+ G+ K+RI EVVELVG Sbjct: 64 TIGGYSIRKNYEQAAAQIGAIVENPEMYKFLSGYNNLKHFARMMQGITKERIDEVVELVG 123 Query: 129 LGQRIHDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQE 188 LG RIH+KV+TYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRL QE Sbjct: 124 LGNRIHEKVQTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLTQE 183 Query: 189 EGTTVFVSSHLLSEMELMCDSVAIIQNGKLIDVKQLKAVGAEILPDGETLFEVSDPEAAL 248 EGTTVFVSSHLLSEMELMCD+V II++GKL+D++QL+ G E + + ET F VSD +AA Sbjct: 184 EGTTVFVSSHLLSEMELMCDTVGIIRHGKLVDIRQLRTDGGERMFE-ETAFTVSDADAAA 242 Query: 249 ALLG--TGVLKDGGVAVAADREVIAELNAKLVTGGIKVYGIRVLSRSLEDQFLEITGG 304 ALL ++ V V DR++IA++NA LV GI+VY I+ ++RSLEDQFLE+TGG Sbjct: 243 ALLQDYQATAREHRVLVRGDRDMIADINAALVEAGIRVYAIQPVTRSLEDQFLEMTGG 300 >B1D5Q4.1 B1D5Q4_9BACL ABC transporter related Length = 306 Score = 405 bits (1040), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/303 (65%), Positives = 241/303 (79%), Gaps = 4/303 (1%) Query: 9 KPVASLMGVTKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISRGDI 68 +P+ L VTK+IG KT++ +LTLD+P G++FGFLGPNG+GKTTTIRMMVGL++++ G+I Sbjct: 3 QPIVQLQQVTKRIGKKTIIDNLTLDLPLGEVFGFLGPNGSGKTTTIRMMVGLMAMTAGEI 62 Query: 69 LICGRSIKDHFEEAVANIGAIVENPEMYKFLTGYQNLRQYARMVPGVNKKRIHEVVELVG 128 I G SI+ +++A+ N+GAIVENPEMYK+LTGYQNL +ARM+ GV +RI EV+ LVG Sbjct: 63 KIGGHSIRTQYQQAIRNVGAIVENPEMYKYLTGYQNLVHFARMIEGVTPERIQEVITLVG 122 Query: 129 LGQRIHDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQE 188 L RIHDKVKTYSLGMRQRLGVAQA+LHRPKLLILDEPTNGLDP GIRELRDYLR+L +E Sbjct: 123 LESRIHDKVKTYSLGMRQRLGVAQAILHRPKLLILDEPTNGLDPAGIRELRDYLRQLSKE 182 Query: 189 EGTTVFVSSHLLSEMELMCDSVAIIQNGKLIDVKQLKAVGAEILPDGETLFEVSDPEAAL 248 EG VFVSSHLLSEMELMCD VAIIQNGKLIDV+ + G ++ D LFEV P A Sbjct: 183 EGIAVFVSSHLLSEMELMCDRVAIIQNGKLIDVRTMHQGGLDVASDVNMLFEVDKPAEAS 242 Query: 249 AL---LGTGVLKDG-GVAVAADREVIAELNAKLVTGGIKVYGIRVLSRSLEDQFLEITGG 304 L LG ++G + + A+RE A+ NA+LV GIKVYGIRV ++SLEDQFLE+TGG Sbjct: 243 DLASELGKAAFREGDSLIIEANREFAADFNARLVAAGIKVYGIRVQTKSLEDQFLEVTGG 302 Query: 305 EGI 307 E I Sbjct: 303 ERI 305 >B1DBQ2.1 B1DBQ2_9BACL ABC transporter related Length = 310 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 186/303 (61%), Positives = 227/303 (74%), Gaps = 7/303 (2%) Query: 9 KPVASLMGVTKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISRGDI 68 +PV SL VTK+IG K ++ DLT D+P G+IFGFLGPNGAGKTTTIRM+VGL+SI++G I Sbjct: 4 EPVISLQNVTKRIGRKNIIDDLTFDVPQGEIFGFLGPNGAGKTTTIRMIVGLMSITQGQI 63 Query: 69 LICGRSIKDHFEEAVANIGAIVENPEMYKFLTGYQNLRQYARMVPGVNKKRIHEVVELVG 128 LI G++IK FE+A+ ++GAIVENPEMYK+L+GY NL YARM+PGV K+RI EVV LV Sbjct: 64 LIKGKNIKTEFEQAIRHVGAIVENPEMYKYLSGYHNLVHYARMIPGVTKERIDEVVSLVK 123 Query: 129 LGQRIHDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQE 188 L RIH+KV+ YSLGMRQRLGVAQALLHRP LLILDEPTNGLDP+GIRELRDYLR L + Sbjct: 124 LESRIHEKVRKYSLGMRQRLGVAQALLHRPSLLILDEPTNGLDPEGIRELRDYLRHLTRT 183 Query: 189 EGTTVFVSSHLLSEMELMCDSVAIIQNGKLIDVKQLKAVGAEILPDGETLFEVSDPEAAL 248 EG TV VSSHLLSEMELMCD VAI+Q GKLIDVK + P E E A+ Sbjct: 184 EGITVVVSSHLLSEMELMCDRVAILQRGKLIDVKPIDYFTQGNDPVQTYRIEAQLTERAM 243 Query: 249 ALLGT-------GVLKDGGVAVAADREVIAELNAKLVTGGIKVYGIRVLSRSLEDQFLEI 301 A +G V ++G + V +RE I ++ +L+ I+VYG++ + RSLED FLE+ Sbjct: 244 AAIGQLEGIQELKVSEEGFIEVTTERERIPDILVELMKNQIRVYGVQRVRRSLEDGFLEL 303 Query: 302 TGG 304 TGG Sbjct: 304 TGG 306 >C5D621.1 C5D621_9BACI ABC transporter related Length = 304 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 181/306 (59%), Positives = 232/306 (75%), Gaps = 9/306 (2%) Query: 8 VKPVASLMGVTKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISRGD 67 + P+ L V K IG KT++ DL+L++ PG++FGFLGPNGAGKTTTIRM+VGL+ I+ G+ Sbjct: 1 MNPLLQLKNVRKDIGKKTIIHDLSLEVFPGEVFGFLGPNGAGKTTTIRMIVGLMGITSGE 60 Query: 68 ILICGRSIKDHFEEAVANIGAIVENPEMYKFLTGYQNLRQYARMVPGVNKKRIHEVVELV 127 +LI G SI+ FE+A+ ++GAIVENPEMYKFLTGYQNL YARM GV K+RI+EVV+LV Sbjct: 61 VLINGISIQKDFEKAIQHVGAIVENPEMYKFLTGYQNLLHYARMTKGVTKERINEVVKLV 120 Query: 128 GLGQRIHDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQ 187 GL +RIHDKVKTYSLGMRQRLG+AQALLHRP LLILDEPTNGLDP GIRE+RDYLR+L + Sbjct: 121 GLEKRIHDKVKTYSLGMRQRLGLAQALLHRPSLLILDEPTNGLDPAGIREIRDYLRKLAK 180 Query: 188 EEGTTVFVSSHLLSEMELMCDSVAIIQNGKLIDVKQLKAVGAEILPDGETLFEVSDPEAA 247 EEG + VSSHLLSEME+MCD AIIQ+G+L+ ++ ++ + + + L V E A Sbjct: 181 EEGLGIIVSSHLLSEMEMMCDRFAIIQHGRLVGIESVQELSKQ---AQKVLLTVEPVEQA 237 Query: 248 LALLGTGVLK------DGGVAVAADREVIAELNAKLVTGGIKVYGIRVLSRSLEDQFLEI 301 L ++ G+ V+ D + I LNA LV+ IKVYGI+VL++SLE++FLE+ Sbjct: 238 LTVIKNIYPHMNITPAKQGIEVSIDYKEIPSLNAALVSENIKVYGIQVLTKSLEERFLEM 297 Query: 302 TGGEGI 307 TGG I Sbjct: 298 TGGNEI 303 >P54592.1 YHCH_BACSU Uncharacterized ABC transporter ATP-binding protein yhcH Length = 305 Score = 351 bits (901), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 173/298 (58%), Positives = 224/298 (75%), Gaps = 4/298 (1%) Query: 8 VKPVASLMGVTKKIGSKTLVSDLTLDIPPGQIFGFLGPNGAGKTTTIRMMVGLISISRGD 67 +K V L VTK I +T++ DL+ I G++FGFLGPNGAGKTTTIRMMVGL+ +S+GD Sbjct: 1 MKTVLELKNVTKNIRGRTIIDDLSFTIREGEVFGFLGPNGAGKTTTIRMMVGLMKLSKGD 60 Query: 68 ILICGRSIKDHFEEAVANIGAIVENPEMYKFLTGYQNLRQYARMVPGVNKKRIHEVVELV 127 +LICG+SI + +A+ +IGAIVENPE+YKFL+GY+NL+Q+ARMV GV K++I EVVELV Sbjct: 61 VLICGQSITKEYAKAIKHIGAIVENPELYKFLSGYKNLQQFARMVKGVTKEKIDEVVELV 120 Query: 128 GLGQRIHDKVKTYSLGMRQRLGVAQALLHRPKLLILDEPTNGLDPQGIRELRDYLRRLCQ 187 GL RIHDKVKTYSLGMRQRLG+AQ LLH PK+LILDEPTNGLDP GIRE+RD+L++L + Sbjct: 121 GLTDRIHDKVKTYSLGMRQRLGLAQCLLHDPKVLILDEPTNGLDPAGIREIRDHLKKLTR 180 Query: 188 EEGTTVFVSSHLLSEMELMCDSVAIIQNGKLIDVKQLKAVGAEILPDGETLFEVSDPEAA 247 E G V VSSHLLSEMELMCD +AI+Q GKLID++ +K I + F+V P A Sbjct: 181 ERGMAVIVSSHLLSEMELMCDRIAILQKGKLIDIQNVK--DENIDENDTYFFQVEQPSEA 238 Query: 248 LALLGTGVL--KDGGVAVAADREVIAELNAKLVTGGIKVYGIRVLSRSLEDQFLEITG 303 +L L K GV + +E + + LV I++Y ++V+++SLED+FLE+TG Sbjct: 239 ATVLNQYDLLSKTNGVEIKLAKEEVPAVIELLVMQQIRIYEVKVITKSLEDRFLEMTG 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,789,450,672 Number of extensions: 74633568 Number of successful extensions: 525105 Number of sequences better than 1.0e-05: 93043 Number of HSP's gapped: 423825 Number of HSP's successfully gapped: 99962 Length of query: 308 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 173 Effective length of database: 1,788,859,178 Effective search space: 309472637794 Effective search space used: 309472637794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)