BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0047.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE73.1 B3KE73_9BACI Putative ABC-2 type transport system perme... 157 5e-37 B1D5Q3.1 B1D5Q3_9BACL Putative uncharacterized protein 136 1e-30 C1PFB1.1 C1PFB1_BACCO Putative uncharacterized protein 103 1e-20 B1DBQ3.1 B1DBQ3_9BACL Putative uncharacterized protein 100 7e-20 P54593.1 YHCI_BACSU Uncharacterized protein yhcI 99 1e-19 >B3KE73.1 B3KE73_9BACI Putative ABC-2 type transport system permease protein Length = 258 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 126/202 (62%), Gaps = 1/202 (0%) Query: 2 SVSFFLNTIFTVVIASDSVAGEFSWGTIKLLLIRPWXXXXXXXXXXXXXXXXXXXXTAVL 61 S + +L+ IFTVVIA+D VAGEFS GTIKLLLIRPW + Sbjct: 58 SFTIYLSAIFTVVIAADIVAGEFSGGTIKLLLIRPWSRGKILLSKFAALCLFGLLCAGIT 117 Query: 62 IVFGYVSAMIFXXXXXXXXXXXXDWSPAEYTFLGILCSYAELFVTAALAFMVSSVFRASG 121 +V G +M+ D SP + L +L ++FV + +AFM+S+VFR+ G Sbjct: 118 MVVGIAVSMLLFSGNAGFSDGF-DGSPMSNSLLLLLTDTIQVFVISLIAFMLSTVFRSGG 176 Query: 122 LAIGLSLFIMFAKDIIAAIFSPERYEWAKYLIFTHMDLHGYLLTDKGPGGSTLGFALVVL 181 LAIGLSL ++F KDI IF+PER+ WAKYL+F H DL GY+ + GPGG LGF++ +L Sbjct: 177 LAIGLSLLVLFTKDIFGFIFNPERFVWAKYLLFLHTDLSGYISSPVGPGGVGLGFSVAIL 236 Query: 182 AVYYLIFMLVSWIVFRKRDVAA 203 AVY L+FMLVSW+ F KRDVAA Sbjct: 237 AVYCLLFMLVSWLAFTKRDVAA 258 >B1D5Q3.1 B1D5Q3_9BACL Putative uncharacterized protein Length = 272 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/207 (40%), Positives = 112/207 (54%), Gaps = 4/207 (1%) Query: 1 VSVSFFLNTIFTVVIASDSVAGEFSWGTIKLLLIRPWXXXXXXXXXXXXXXXXXXXXTAV 60 V +++ L T+FT++IAS VA EF+ GTIKLLLIRPW V Sbjct: 66 VMIAYLLITVFTIIIASSGVAEEFTSGTIKLLLIRPWTRSKILLSKYIAVLLYALGMVIV 125 Query: 61 LIVFGYVSAMIF----XXXXXXXXXXXXDWSPAEYTFLGILCSYAELFVTAALAFMVSSV 116 +++F V MI S A Y L Y L VT LAFM+++V Sbjct: 126 MLLFTIVLNMILFDTSDNTATDIISPLVSGSIAAYLIKYALLKYVSLIVTTTLAFMLATV 185 Query: 117 FRASGLAIGLSLFIMFAKDIIAAIFSPERYEWAKYLIFTHMDLHGYLLTDKGPGGSTLGF 176 R+ LAIGLSLF++ + + + +Y+WA Y++F H+DL YL G TLGF Sbjct: 186 SRSGALAIGLSLFLILGVNSFTPLLAALKYKWADYILFIHLDLTQYLNDTPMRDGLTLGF 245 Query: 177 ALVVLAVYYLIFMLVSWIVFRKRDVAA 203 ++ VLAVYY IFM ++W VF+KRDVAA Sbjct: 246 SIAVLAVYYAIFMALAWYVFKKRDVAA 272 >C1PFB1.1 C1PFB1_BACCO Putative uncharacterized protein Length = 315 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/205 (33%), Positives = 109/205 (53%), Gaps = 11/205 (5%) Query: 9 TIFTVVIASDSVAGEFSWGTIKLLLIRPWXXXXXXXXXXXXXXXXXXXXTAVLIVFGYVS 68 T+F+V++ S +V+ EF+ GTIK L+IRP AVL++ GY+ Sbjct: 110 TLFSVIVGSANVSSEFASGTIKQLMIRPHARWKILLSKYIAVTAYAVLLLAVLLIAGYLI 169 Query: 69 AMIFXXXXXXXXXXXXDW-SPAEYT--------FLGILCSYAELFVTAALAFMVSSVFRA 119 ++F + ++Y FL L + +A+AFM+S++F++ Sbjct: 170 GLLFQGSGSFHMKMIENTVGDSQYKIKEIGPQFFLKFALYLPSLVMVSAIAFMLSTLFKS 229 Query: 120 SGLAIGLSLFIMFAKDIIAAI--FSPERYEWAKYLIFTHMDLHGYLLTDKGPGGSTLGFA 177 LA+G+ +F +F + + I F RY W K+LIF H+DL Y DK G TL F+ Sbjct: 230 QALAVGIGIFALFITNTLGGIILFLMNRYHWLKFLIFPHLDLSVYAYQDKLTDGVTLPFS 289 Query: 178 LVVLAVYYLIFMLVSWIVFRKRDVA 202 L+ LAVYY++FM +++ F+KRD+A Sbjct: 290 LITLAVYYVVFMTLTFWYFQKRDIA 314 >B1DBQ3.1 B1DBQ3_9BACL Putative uncharacterized protein Length = 312 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 71/195 (36%), Positives = 100/195 (51%), Gaps = 9/195 (4%) Query: 16 ASDSVAGEFSWGTIKLLLIRPWXXXXXXXXXXXXXXXXXXXXTAVLIVFGYVSAMIFX-- 73 A D VA EF+ GTIKLLLIRP L + V I Sbjct: 120 AGDIVASEFATGTIKLLLIRPASRIRILVSKYISILLFSMVLLLTLFILSVVLNGILHGF 179 Query: 74 XXXXXXXXXXXDWSPAEYT-FLGILCSYAELFVTA----ALAFMVSSVFRASGLAIGLSL 128 D AE FL + +Y V+ +AFM+SS FR+S ++IG S+ Sbjct: 180 HDMDLPLVSITDGHIAEKNMFLHLWETYMLNGVSTIMYVTIAFMISSAFRSSAMSIGFSI 239 Query: 129 FIMFAKDIIAAIFSPERYEWAKYLIFTHMDLHGYLLTDKGPGGSTLGFALVVLAVYYLIF 188 I+FA +I+ + +RYEW+KYL+F + DL YL G TL F+++VL +Y+L+F Sbjct: 240 GILFAGNILLQLL--QRYEWSKYLLFANTDLTQYLEGKPFQDGMTLSFSIIVLVIYFLVF 297 Query: 189 MLVSWIVFRKRDVAA 203 L+SW++F +RDVAA Sbjct: 298 NLISWLMFTRRDVAA 312 >P54593.1 YHCI_BACSU Uncharacterized protein yhcI Length = 313 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 111/208 (53%), Gaps = 16/208 (7%) Query: 7 LNTIFTVVIASDSVAGEFSWGTIKLLLIRPWXXXXXXXXXXXXXXXXXXXXTAVLIVFGY 66 L +FT++IA+ VA EF+WGTIKLL+IRP +L + Sbjct: 109 LTGLFTIIIAAGIVANEFNWGTIKLLMIRPLSRFQILMSKYITVLLFGLLLLLILFIGST 168 Query: 67 VSAMIF----XXXXXXXXXXXXDWSPAEYTFLGILC------SYAELFVTAALAFMVSSV 116 + +IF D E +G L S + L V A +AFM+S+V Sbjct: 169 LLGLIFFGTGGETAANIHLIYKDGHVIEQNMMGHLATTYLSESVSALMV-ATMAFMLSAV 227 Query: 117 FRASGLAIGLSLFIMFAKDIIAAIFSPERYEWAKYLIFTHMDLHGYLLTDKGP--GGSTL 174 FR S LA+G S+F++ A A F +++WAKY++F ++DL Y+ D P G T+ Sbjct: 228 FRNSSLAVGFSIFLLVA-GTTATAFIAAKFDWAKYILFANVDLTQYV--DGTPLIKGMTM 284 Query: 175 GFALVVLAVYYLIFMLVSWIVFRKRDVA 202 F+LV+LA+Y++IF+L+++ +F KRD+A Sbjct: 285 TFSLVMLAIYFIIFLLLAFGIFMKRDIA 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 929,274,226 Number of extensions: 31021746 Number of successful extensions: 103424 Number of sequences better than 1.0e-05: 202 Number of HSP's gapped: 103374 Number of HSP's successfully gapped: 202 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 128 (53.9 bits)