BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0043.p (302 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z5W4.1 C0Z5W4_BREBN Conserved hypothetical membrane protein 357 6e-97 B1DH34.1 B1DH34_9BACL Putative uncharacterized protein 341 5e-92 Q2BB06.1 Q2BB06_9BACI Uncharacterized conserved protein, YitT fa... 337 9e-91 C1PFT3.1 C1PFT3_BACCO Putative uncharacterized protein 328 5e-88 C0ZCW2.1 C0ZCW2_BREBN Conserved hypothetical membrane protein 324 6e-87 >C0Z5W4.1 C0Z5W4_BREBN Conserved hypothetical membrane protein Length = 276 Score = 357 bits (917), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 175/276 (63%), Positives = 218/276 (78%) Query: 27 LIQRIVMMVLGAAMMSVALEIFLVPNQLIDGGITGISIMISHIFHIPLGIILTLLNLPFL 86 +++R+ +++GA++ SVALEIFLVPN +IDGGI GISI+ SH+ IPLG+ L +LNLPFL Sbjct: 1 MLKRVFGILIGASLFSVALEIFLVPNNIIDGGIVGISIITSHLSGIPLGVFLFVLNLPFL 60 Query: 87 IIGYKQIGKTFALSTLFAVVLMSIGTQLLHPVAPLTGEPXXXXXXXXXXXXXXXXXXXXX 146 IIGYKQIGKTFALSTLF V +MS+GT LH V LT +P Sbjct: 61 IIGYKQIGKTFALSTLFGVTIMSVGTTFLHEVKGLTDDPLLAAVFGGILLGIGVGLVLRY 120 Query: 147 XXXXDGTEIVAILVSKKLPFSVGEVVMFFNLFILSGAGFVFGWNNAMFSLIAYYIAFKVI 206 DGTEIVA+L++KK PFSVGE+VMF NLFILS AGFVFGW+ AM+SLIAYYIAFK+I Sbjct: 121 GGSLDGTEIVAVLLNKKSPFSVGEIVMFMNLFILSSAGFVFGWDRAMYSLIAYYIAFKMI 180 Query: 207 DVTLEGLDQSKSVWIISDKFRDIGEALTERLGRGVTYLDGEGGFSGDNKKVIFVVITRLE 266 D+T+EG +SK+VWIISD +D+G+A+ RLGRGVTYL+GEGG++GD+KKVIF +ITRLE Sbjct: 181 DLTIEGFQESKAVWIISDNHKDLGDAIVARLGRGVTYLNGEGGYTGDDKKVIFCIITRLE 240 Query: 267 EAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKAIH 302 EAKLK IVE+ D +AF+A+GNIHDV+GG+FKK AIH Sbjct: 241 EAKLKLIVEEVDPNAFLAVGNIHDVRGGQFKKNAIH 276 >B1DH34.1 B1DH34_9BACL Putative uncharacterized protein Length = 290 Score = 341 bits (874), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 176/279 (63%), Positives = 220/279 (78%) Query: 24 RARLIQRIVMMVLGAAMMSVALEIFLVPNQLIDGGITGISIMISHIFHIPLGIILTLLNL 83 + L++RI+ + LGAA++SV LEIFLVPN +IDGGI GISI++SH+ +PLGI L LLNL Sbjct: 12 KLELLRRILFITLGAALVSVGLEIFLVPNHIIDGGIVGISIIVSHLTGLPLGIFLFLLNL 71 Query: 84 PFLIIGYKQIGKTFALSTLFAVVLMSIGTQLLHPVAPLTGEPXXXXXXXXXXXXXXXXXX 143 PFL++GYKQIGKTFA+STL+ V +MS+GT LLHPV PLT E Sbjct: 72 PFLVLGYKQIGKTFAMSTLYGVSVMSLGTFLLHPVPPLTEEYFLASIFGGVILGIGVGIV 131 Query: 144 XXXXXXXDGTEIVAILVSKKLPFSVGEVVMFFNLFILSGAGFVFGWNNAMFSLIAYYIAF 203 DGTEI+AIL +K+LPFSVGE+VMFFNLFIL AGFVFGW+ AM+SL+AYYIA+ Sbjct: 132 IRFGGSLDGTEIIAILFNKRLPFSVGEIVMFFNLFILGSAGFVFGWDRAMYSLVAYYIAY 191 Query: 204 KVIDVTLEGLDQSKSVWIISDKFRDIGEALTERLGRGVTYLDGEGGFSGDNKKVIFVVIT 263 K+ID+T+EG ++SK+VWIISD+ ++IG A+ +RLGRGVTY+ GEGGFSG K++IF VIT Sbjct: 192 KMIDITMEGFEESKAVWIISDEAKEIGSAIMDRLGRGVTYMHGEGGFSGGQKRIIFCVIT 251 Query: 264 RLEEAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKAIH 302 RLEEAK+KSIV D D AF+A+GNIHDVKGGRFKK+ IH Sbjct: 252 RLEEAKMKSIVNDIDPSAFLAVGNIHDVKGGRFKKRDIH 290 >Q2BB06.1 Q2BB06_9BACI Uncharacterized conserved protein, YitT family protein Length = 320 Score = 337 bits (864), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 168/298 (56%), Positives = 212/298 (71%), Gaps = 6/298 (2%) Query: 5 QKIFSNEEQKKPQKSEAFKRARLIQRIVMMVLGAAMMSVALEIFLVPNQLIDGGITGISI 64 Q + E +K K + KRA LI +GA +M V LEIFLVPNQ+IDGGI GISI Sbjct: 29 QAVLLRESHRKMTKGKILKRALLI------TIGAILMGVGLEIFLVPNQVIDGGIVGISI 82 Query: 65 MISHIFHIPLGIILTLLNLPFLIIGYKQIGKTFALSTLFAVVLMSIGTQLLHPVAPLTGE 124 M+SH+ + LG+I+ LLN+PF IGYKQIGKTFA+STL+ + ++SI T LLHPV T + Sbjct: 83 MLSHLTGVKLGLIIFLLNIPFFFIGYKQIGKTFAISTLYGIFILSITTALLHPVPAFTQD 142 Query: 125 PXXXXXXXXXXXXXXXXXXXXXXXXXDGTEIVAILVSKKLPFSVGEVVMFFNLFILSGAG 184 DG+E++AIL +KKLPFSVGE++MF NLFIL AG Sbjct: 143 ILLASVFGGIVLGIGVGIVIRYGGSLDGSEVLAILANKKLPFSVGEIIMFINLFILGSAG 202 Query: 185 FVFGWNNAMFSLIAYYIAFKVIDVTLEGLDQSKSVWIISDKFRDIGEALTERLGRGVTYL 244 FVF W+ AM+SLIAY++AFK ID+T+ GL++SKSVW+ISD +R IG+A+ RLGRGVTYL Sbjct: 203 FVFTWDRAMYSLIAYFVAFKTIDITITGLEESKSVWVISDNYRQIGDAINSRLGRGVTYL 262 Query: 245 DGEGGFSGDNKKVIFVVITRLEEAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKAIH 302 GEG +SGD+KKVIF VI RLEEAKLK IVE D AF+A+G+I +V+GGRFKK+ IH Sbjct: 263 SGEGAYSGDDKKVIFCVINRLEEAKLKEIVEGLDPSAFLAVGDIAEVRGGRFKKQDIH 320 >C1PFT3.1 C1PFT3_BACCO Putative uncharacterized protein Length = 296 Score = 328 bits (840), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 170/302 (56%), Positives = 215/302 (71%), Gaps = 6/302 (1%) Query: 1 MTVSQKIFSNEEQKKPQKSEAFKRARLIQRIVMMVLGAAMMSVALEIFLVPNQLIDGGIT 60 M + K ++ QKK K A L QR + + LGA +M VALE+FLVPNQ++DGGIT Sbjct: 1 MEETAKTYAQFRQKKN------KWAVLGQRFIFVSLGAMIMGVALELFLVPNQILDGGIT 54 Query: 61 GISIMISHIFHIPLGIILTLLNLPFLIIGYKQIGKTFALSTLFAVVLMSIGTQLLHPVAP 120 GISI++SH+ LG ++ +LNLPF IGYKQIGKTFAL+TL+ + +MS+ T LL PV Sbjct: 55 GISIILSHLAGWKLGPVIFILNLPFFYIGYKQIGKTFALTTLYGISIMSVTTILLTPVKV 114 Query: 121 LTGEPXXXXXXXXXXXXXXXXXXXXXXXXXDGTEIVAILVSKKLPFSVGEVVMFFNLFIL 180 T + DGTE +AIL++KKLPFSVGE+++ NLFI Sbjct: 115 FTDDLLLCTVFGGIILGIGVGLVIRWGGCLDGTEALAILLNKKLPFSVGEIILGLNLFIF 174 Query: 181 SGAGFVFGWNNAMFSLIAYYIAFKVIDVTLEGLDQSKSVWIISDKFRDIGEALTERLGRG 240 + AGFVF W AM+S+I Y+IA K IDV ++GLD+SKSVWIISD+ DIG+A+ RLGRG Sbjct: 175 TCAGFVFSWKYAMYSVITYFIATKAIDVVVQGLDESKSVWIISDEMYDIGDAIMARLGRG 234 Query: 241 VTYLDGEGGFSGDNKKVIFVVITRLEEAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKA 300 VTYL+GEG ++GDNKKVIF VITRLEEAKLKSIVE++D AFIA+GNI +V+GGRFKKK Sbjct: 235 VTYLNGEGAYTGDNKKVIFCVITRLEEAKLKSIVEEFDKSAFIAVGNISEVRGGRFKKKD 294 Query: 301 IH 302 IH Sbjct: 295 IH 296 >C0ZCW2.1 C0ZCW2_BREBN Conserved hypothetical membrane protein Length = 294 Score = 324 bits (831), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 176/287 (61%), Positives = 220/287 (76%) Query: 16 PQKSEAFKRARLIQRIVMMVLGAAMMSVALEIFLVPNQLIDGGITGISIMISHIFHIPLG 75 P + K+ R+ R + +++GA +++V LEIFLVPN +IDGG+TG+SIM+S + PLG Sbjct: 8 PITHKRKKKRRIAVRTLGIIIGALLVAVGLEIFLVPNNIIDGGVTGVSIMVSKLTGGPLG 67 Query: 76 IILTLLNLPFLIIGYKQIGKTFALSTLFAVVLMSIGTQLLHPVAPLTGEPXXXXXXXXXX 135 + L LLNLPFL++GYKQIGKTFA+STLF VV+MS+GT LH V LT + Sbjct: 68 LFLFLLNLPFLLVGYKQIGKTFAISTLFGVVVMSLGTSYLHHVPSLTDDLLLSAVFGGII 127 Query: 136 XXXXXXXXXXXXXXXDGTEIVAILVSKKLPFSVGEVVMFFNLFILSGAGFVFGWNNAMFS 195 DGTEIVAIL+++K PFSVGE+VMFFN+FIL AGF+FGW+ AM+S Sbjct: 128 IGIGVGLVIRAGGSLDGTEIVAILMTRKSPFSVGEMVMFFNIFILGSAGFIFGWDRAMYS 187 Query: 196 LIAYYIAFKVIDVTLEGLDQSKSVWIISDKFRDIGEALTERLGRGVTYLDGEGGFSGDNK 255 LIAYYIA+K+ID+T+ GL+QS+SVWIISD +IG+ALT RLGRG+TYL+GEGG+SGD K Sbjct: 188 LIAYYIAYKMIDITMVGLEQSRSVWIISDYPAEIGDALTARLGRGITYLNGEGGYSGDVK 247 Query: 256 KVIFVVITRLEEAKLKSIVEDWDSDAFIAIGNIHDVKGGRFKKKAIH 302 KVIF VITRLEEAKLKSIVE+ DS AF+AIG+IHDV GGRFKKK IH Sbjct: 248 KVIFCVITRLEEAKLKSIVEEIDSSAFLAIGHIHDVSGGRFKKKNIH 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.142 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,511,725,510 Number of extensions: 58098870 Number of successful extensions: 203411 Number of sequences better than 1.0e-05: 1772 Number of HSP's gapped: 200833 Number of HSP's successfully gapped: 1918 Length of query: 302 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 167 Effective length of database: 1,788,859,178 Effective search space: 298739482726 Effective search space used: 298739482726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)