BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0035.p
         (68 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE59.1 B3KE59_9BACI Small acid-soluble spore protein, H-type         87   7e-16
B1D5P4.1 B1D5P4_9BACL Small acid-soluble spore protein, H-type         64   3e-09

>B3KE59.1 B3KE59_9BACI Small acid-soluble spore protein, H-type
          Length = 60

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 8  MDVQRAKAIYASKDMISVHLDGEPVWIEHVDAENGMATVQVGSRPTNTHTVGVERLEEQE 67
          M++QRA  I+ SKD   V+L+GEPVWIE +D +NGMATVQVGSRPTNT TV V+RL+E E
Sbjct: 1  MEMQRAVEIFNSKDTYKVNLEGEPVWIEQIDPQNGMATVQVGSRPTNTLTVNVDRLKEGE 60


>B1D5P4.1 B1D5P4_9BACL Small acid-soluble spore protein, H-type
          Length = 57

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 42/59 (71%), Gaps = 4/59 (6%)

Query: 8  MDVQRAKAIYASKDMISVHLD-GEPVWIEHVDAENGMATVQVGSRPTNTHTVGVERLEE 65
          MDV RAK IY S++ I VHLD G  VWIEHVD  +G ATVQVG    N+ TV V+RL+E
Sbjct: 1  MDVNRAKQIYNSEESIKVHLDDGNSVWIEHVDEASGTATVQVGG---NSKTVPVDRLQE 56


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.311    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 400,003,869
Number of extensions: 12549231
Number of successful extensions: 20541
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 20540
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 3,060,696,203
Length adjustment: 40
Effective length of query: 28
Effective length of database: 2,683,855,603
Effective search space: 75147956884
Effective search space used: 75147956884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)