BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0034.p (163 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE58.1 B3KE58_9BACI Putative uncharacterized protein 215 1e-54 B1DH36.1 B1DH36_9BACL Putative uncharacterized protein 166 6e-40 O05515.1 YDIB_BACSU UPF0079 ATP-binding protein ydiB 148 1e-34 A7Z1Z5.1 A7Z1Z5_BACA2 YdiB 146 7e-34 C0ZK38.1 C0ZK38_BREBN Putative uncharacterized protein ydiB 145 9e-34 >B3KE58.1 B3KE58_9BACI Putative uncharacterized protein Length = 156 Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/149 (68%), Positives = 116/149 (77%) Query: 13 SYSLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHLGVQGIVSSPTFTIIK 72 S SLE+T PG VIGLDGDLGAGKTAFSQ FARHLGV G+V+SPTFTIIK Sbjct: 3 SSSLEETEQLAAWLAARAEPGTVIGLDGDLGAGKTAFSQQFARHLGVNGVVNSPTFTIIK 62 Query: 73 EYEGRLPLYHMDVYRISLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPRLLHIAIETC 132 EYEGRLPLYHMDVYR+S+ EADELGLDEYFYG GVCLVEWS +I +LMP + LHI +ET Sbjct: 63 EYEGRLPLYHMDVYRLSVDEADELGLDEYFYGDGVCLVEWSSLITELMPEQYLHIQLETT 122 Query: 133 GPEERLITVTGSGEPYGGVCRALNQKWGN 161 G R+IT++ G PYG CR LN+KWG+ Sbjct: 123 GETNRIITLSSQGGPYGEWCRDLNEKWGS 151 >B1DH36.1 B1DH36_9BACL Putative uncharacterized protein Length = 165 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 106/156 (67%), Gaps = 3/156 (1%) Query: 6 ETVFTYRSYSLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHLGVQGIVSS 65 + VFT RS ++T PG V+ LDGDLGAGKT FSQ FA+ +GV IV+S Sbjct: 6 QVVFTVRSE--QETALLAQRIAGLVKPGTVLALDGDLGAGKTTFSQKFAKAIGVTDIVNS 63 Query: 66 PTFTIIKEYEG-RLPLYHMDVYRISLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPRL 124 PTFTIIKEYEG +P YHMDVYR+SL+EADELGLD+YF+G GV +VEW+ +I +L+PP Sbjct: 64 PTFTIIKEYEGASMPFYHMDVYRLSLEEADELGLDDYFFGDGVTIVEWASLIEELLPPER 123 Query: 125 LHIAIETCGPEERLITVTGSGEPYGGVCRALNQKWG 160 L + I G EER ++G GEPY A +++ G Sbjct: 124 LEMYIAHEGGEERQFRISGIGEPYASWSEAFSKEMG 159 >O05515.1 YDIB_BACSU UPF0079 ATP-binding protein ydiB Length = 158 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 100/150 (66%), Gaps = 2/150 (1%) Query: 9 FTYRSYSLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHLGVQGIVSSPTF 68 +R+ + E+T PG V+ L+GDLGAGKT F++ FA LG+ IV+SPTF Sbjct: 4 LKWRTVNPEETKAIAKLTAAFAKPGDVLTLEGDLGAGKTTFTKGFAEGLGITRIVNSPTF 63 Query: 69 TIIKEY-EGRLPLYHMDVYRISLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPRLLHI 127 TIIKEY +G LPLYHMDVYR+ E+++LGLDEYF+GQGVCLVEW+ +I + +P L I Sbjct: 64 TIIKEYNDGVLPLYHMDVYRME-DESEDLGLDEYFHGQGVCLVEWAHLIEEQLPQERLQI 122 Query: 128 AIETCGPEERLITVTGSGEPYGGVCRALNQ 157 I+ G +ER IT T G Y +C L++ Sbjct: 123 VIKRAGDDEREITFTAVGNRYEMLCEELSR 152 >A7Z1Z5.1 A7Z1Z5_BACA2 YdiB Length = 158 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 72/151 (47%), Positives = 97/151 (64%), Gaps = 2/151 (1%) Query: 8 VFTYRSYSLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHLGVQGIVSSPT 67 +R+ + E+T PG ++ L+GDLGAGKT F++ FA LG+ +V+SPT Sbjct: 3 TLQWRTKNPEETKAVAKLAASLAKPGDILTLEGDLGAGKTTFTKGFAEGLGITRVVNSPT 62 Query: 68 FTIIKEY-EGRLPLYHMDVYRISLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPRLLH 126 FTIIKEY +G LPLYHMDVYR+ E+++LGL+EYF GQGVCL+EW+ +I D +P L Sbjct: 63 FTIIKEYHDGSLPLYHMDVYRME-DESEDLGLEEYFEGQGVCLIEWAHLIQDQLPAERLQ 121 Query: 127 IAIETCGPEERLITVTGSGEPYGGVCRALNQ 157 I I G E R IT T G Y +C +N+ Sbjct: 122 IVITRAGDEARDITFTACGTRYETLCEEINK 152 >C0ZK38.1 C0ZK38_BREBN Putative uncharacterized protein ydiB Length = 159 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 4 IAETVFTYRSYSLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHLGVQGIV 63 + E +T+R ++T PG + ++GDLGAGKT F+Q A+ LGV+ +V Sbjct: 1 MKEMSYTWRLTGAQETQRFAEQLASLLEPGDFLAMEGDLGAGKTTFTQGLAKGLGVRQVV 60 Query: 64 SSPTFTIIKEYEGRLPLYHMDVYRISLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPR 123 +SPTFTIIKEY+GRLPLYHMDVYR+ + D LGLD+YF+G+GVC+VEW+ +I D++P Sbjct: 61 NSPTFTIIKEYQGRLPLYHMDVYRVG-DDPDSLGLDDYFFGEGVCVVEWASLIEDVLPTD 119 Query: 124 LLHIAIETCGPEERLITVTGSGEPYGGVCRALN 156 + + + G E+R+I + G Y +C+ + Sbjct: 120 RMTVFLRREGEEQRMIELVPQGNRYVKLCKEFD 152 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 971,861,418 Number of extensions: 39482653 Number of successful extensions: 116032 Number of sequences better than 1.0e-05: 1402 Number of HSP's gapped: 114462 Number of HSP's successfully gapped: 1402 Length of query: 163 Length of database: 3,060,696,203 Length adjustment: 123 Effective length of query: 40 Effective length of database: 1,901,911,358 Effective search space: 76076454320 Effective search space used: 76076454320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)