BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0032.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE56.1 B3KE56_9BACI Ribosomal-protein-alanine acetyltransferase 251 1e-65 B1DH38.1 B1DH38_9BACL Ribosomal-protein-alanine acetyltransferase 211 2e-53 C5D4E1.1 C5D4E1_9BACI Ribosomal-protein-alanine acetyltransferase 182 1e-44 C3FXH6.1 C3FXH6_BACTU Ribosomal-protein-alanine acetyltransferase 177 2e-43 C1P9I3.1 C1P9I3_BACCO Ribosomal-protein-alanine acetyltransferase 177 3e-43 >B3KE56.1 B3KE56_9BACI Ribosomal-protein-alanine acetyltransferase Length = 174 Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 123/173 (71%), Positives = 138/173 (79%) Query: 1 MMESEPVRDQSTELVFRLMKLVDIPDILIIEREAFTMPWTEEAFRNELTHNHFAKYMVME 60 M E + D L FRLM L DIP++L +EREAFT+PWTEEAF NEL NHFA+YM+ME Sbjct: 1 MDEQKKPADGEEGLSFRLMTLEDIPEVLEVEREAFTVPWTEEAFHNELKLNHFARYMIME 60 Query: 61 LHGRIIGYAGMWAIVDEAHVTNIALLEAYRGRKWGERLLDELMKTAAFLGMKSITLEVRV 120 GR +GYAGMW IVDEAHVTNIALLE YRGRKWG+RLL ELMKTAA++GM+ +TLEVRV Sbjct: 61 YEGRTVGYAGMWTIVDEAHVTNIALLEQYRGRKWGDRLLSELMKTAAYMGMEKMTLEVRV 120 Query: 121 SNEVAQNLYRKKGFRPAGTRKGYYSDNREDALIMWADLPEYGEQGMMEGSVDL 173 SN VAQ LY KKGF+PAG RKGYYSDN+EDALIMWADLP Y E EGS L Sbjct: 121 SNHVAQRLYIKKGFKPAGVRKGYYSDNQEDALIMWADLPPYREDDGEEGSQRL 173 >B1DH38.1 B1DH38_9BACL Ribosomal-protein-alanine acetyltransferase Length = 161 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/150 (67%), Positives = 118/150 (78%) Query: 12 TELVFRLMKLVDIPDILIIEREAFTMPWTEEAFRNELTHNHFAKYMVMELHGRIIGYAGM 71 ++LVFR M + DIP I+ IE EAF PWT EAF+NELT N FA+YMVME +G+IIGY GM Sbjct: 3 SDLVFRSMTMADIPFIVDIEHEAFATPWTPEAFKNELTSNMFARYMVMEHNGQIIGYGGM 62 Query: 72 WAIVDEAHVTNIALLEAYRGRKWGERLLDELMKTAAFLGMKSITLEVRVSNEVAQNLYRK 131 W IVDEAHVTNIA+ +RG+ GERLL EL +TAAF G +TLEVRVSNE+AQ+LYRK Sbjct: 63 WVIVDEAHVTNIAVRADHRGQGLGERLLTELQRTAAFFGANKMTLEVRVSNEIAQSLYRK 122 Query: 132 KGFRPAGTRKGYYSDNREDALIMWADLPEY 161 GF+P+G R YYSDN EDALIMWADL Y Sbjct: 123 LGFKPSGIRPAYYSDNNEDALIMWADLYSY 152 >C5D4E1.1 C5D4E1_9BACI Ribosomal-protein-alanine acetyltransferase Length = 150 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 86/144 (59%), Positives = 108/144 (75%) Query: 16 FRLMKLVDIPDILIIEREAFTMPWTEEAFRNELTHNHFAKYMVMELHGRIIGYAGMWAIV 75 FR M L DI +L +E +FT PW+ EAF NEL +N +AKY+VME +GRIIGYAGMW ++ Sbjct: 7 FRSMTLNDIDAVLQVEHASFTSPWSREAFYNELVYNRYAKYIVMEHNGRIIGYAGMWVVI 66 Query: 76 DEAHVTNIALLEAYRGRKWGERLLDELMKTAAFLGMKSITLEVRVSNEVAQNLYRKKGFR 135 DEAH+TN+A+L YRG+K GE L+ +LM+TA LG ++TLEVRVSN VAQ+LYRK GF Sbjct: 67 DEAHITNVAVLPEYRGKKLGEALMRKLMETAKQLGAVTMTLEVRVSNHVAQSLYRKLGFL 126 Query: 136 PAGTRKGYYSDNREDALIMWADLP 159 G R+ YY DN EDAL+MW L Sbjct: 127 NGGIRRHYYPDNLEDALVMWVKLS 150 >C3FXH6.1 C3FXH6_BACTU Ribosomal-protein-alanine acetyltransferase Length = 147 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 80/146 (54%), Positives = 110/146 (75%) Query: 13 ELVFRLMKLVDIPDILIIEREAFTMPWTEEAFRNELTHNHFAKYMVMELHGRIIGYAGMW 72 +++FR M+L DI I+ IE +F+ PWT +AF ELT N A Y+V+E GR+IGY G+W Sbjct: 2 DMIFRKMELDDIAQIVAIEEASFSTPWTADAFHRELTMNEHAHYVVLEKDGRVIGYCGLW 61 Query: 73 AIVDEAHVTNIALLEAYRGRKWGERLLDELMKTAAFLGMKSITLEVRVSNEVAQNLYRKK 132 I+DE+H+TNIA+L YRG+K G+ LL E++ A LG+K++TLEVRVSNEVA+ LYRK Sbjct: 62 IIIDESHITNIAILPEYRGQKLGDALLKEVISEAKILGVKTMTLEVRVSNEVAKQLYRKY 121 Query: 133 GFRPAGTRKGYYSDNREDALIMWADL 158 GF+ G RK YY+DN+ED L+MW ++ Sbjct: 122 GFQNGGIRKRYYADNQEDGLVMWVNI 147 >C1P9I3.1 C1P9I3_BACCO Ribosomal-protein-alanine acetyltransferase Length = 151 Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 82/150 (54%), Positives = 109/150 (72%) Query: 9 DQSTELVFRLMKLVDIPDILIIEREAFTMPWTEEAFRNELTHNHFAKYMVMELHGRIIGY 68 +++ ++ R L D+ I +E +FTMPWT EAF NEL HNHFA Y+V+ + ++IGY Sbjct: 2 EKTGKITLRKATLADLDGIYNVEMHSFTMPWTREAFYNELVHNHFAMYLVLVENEKVIGY 61 Query: 69 AGMWAIVDEAHVTNIALLEAYRGRKWGERLLDELMKTAAFLGMKSITLEVRVSNEVAQNL 128 G+W IVDEAHVTN+A+L YRGRK GE LL +M AA K+++LEVRVSN +A++L Sbjct: 62 CGVWVIVDEAHVTNLAVLPEYRGRKLGETLLKNVMAYAALNHAKTLSLEVRVSNMIARSL 121 Query: 129 YRKKGFRPAGTRKGYYSDNREDALIMWADL 158 YRK GFR G RKGYY+DN EDA++MW +L Sbjct: 122 YRKLGFREGGIRKGYYTDNYEDAIVMWVNL 151 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,007,380,279 Number of extensions: 38853022 Number of successful extensions: 93640 Number of sequences better than 1.0e-05: 1209 Number of HSP's gapped: 93420 Number of HSP's successfully gapped: 1209 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)