BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0027.p
         (89 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE52.1 B3KE52_9BACI ABC transporter related                         104   2e-21
B1DH50.1 B1DH50_9BACL ABC transporter related                          75   2e-12

>B3KE52.1 B3KE52_9BACI ABC transporter related
          Length = 650

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 66/82 (80%)

Query: 5   EKGAALSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQE 64
           EK  A+S+EAEKQAKREERNRQRR++ LEE I VLE DI ++E EMT PE++QDY+ALQE
Sbjct: 566 EKQGAVSFEAEKQAKREERNRQRRLASLEEQIHVLESDITQLETEMTLPEIYQDYMALQE 625

Query: 65  HESELKLKKEQLGNLFSEWENL 86
            +  L+ KK QL  +F+EWE+L
Sbjct: 626 RQQSLEEKKSQLEQIFAEWESL 647


>B1DH50.1 B1DH50_9BACL ABC transporter related
          Length = 642

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 59/86 (68%), Gaps = 2/86 (2%)

Query: 2   PAAEKGAALSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVA 61
           P  E  A  SYE +KQAKREER+R R++ +LE+ IA LEE IA  E ++T P +F DY+A
Sbjct: 558 PVVE--APTSYEMDKQAKREERSRLRKLEQLEQEIATLEEQIAEFEVQLTDPAIFNDYMA 615

Query: 62  LQEHESELKLKKEQLGNLFSEWENLA 87
           +QE +++++ K+  L   + +WE L+
Sbjct: 616 IQEIQTKIEEKRASLNAAYEQWEQLS 641


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.306    0.125    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 479,822,432
Number of extensions: 16394392
Number of successful extensions: 95466
Number of sequences better than 1.0e-05: 173
Number of HSP's gapped: 95397
Number of HSP's successfully gapped: 173
Length of query: 89
Length of database: 3,060,696,203
Length adjustment: 59
Effective length of query: 30
Effective length of database: 2,504,856,318
Effective search space: 75145689540
Effective search space used: 75145689540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 125 (52.8 bits)