BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0026.p (565 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE52.1 B3KE52_9BACI ABC transporter related 888 0.0 B1DH50.1 B1DH50_9BACL ABC transporter related 837 0.0 C0ZK43.1 C0ZK43_BREBN Probable ABC transporter ATP-binding protein 654 0.0 C5D4E5.1 C5D4E5_9BACI ABC transporter related 648 0.0 O05519.2 YDIF_BACSU Uncharacterized ABC transporter ATP-binding ... 647 0.0 >B3KE52.1 B3KE52_9BACI ABC transporter related Length = 650 Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/540 (77%), Positives = 483/540 (89%), Gaps = 1/540 (0%) Query: 1 MLLQATGITKSYGIQSVLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 MLLQA GITK YG+ VLDGI+LQV E+ER+GLVGVNGAGKST L+ILAGEMS+D GQI Sbjct: 1 MLLQANGITKLYGVTPVLDGINLQVLERERIGLVGVNGAGKSTLLKILAGEMSYDGGQIF 60 Query: 61 KSKETTIGYLAQNSGLQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYE 120 K+KETT+GYLAQNSGLQSD +I EML VF+PL+E E ELRQ+E IADP ++DPK+Y+ Sbjct: 61 KAKETTVGYLAQNSGLQSDSSIWNEMLDVFTPLLEMERELRQMEEQIADPKSSEDPKKYQ 120 Query: 121 DLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARIL 180 +LL+RYA RSDWFKD GGYE+ TRIRSVLHGMGFG F P+T IATLSGGQKTRLALA+IL Sbjct: 121 ELLDRYAVRSDWFKDQGGYEIETRIRSVLHGMGFGSFSPDTSIATLSGGQKTRLALAKIL 180 Query: 181 LQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQS 240 LQAPDLLMLDEPTNHLDI TLTWLEDYLR Y+G +LVVSHDRYFLDRLVTTIVEIER S Sbjct: 181 LQAPDLLMLDEPTNHLDIATLTWLEDYLRGYSGSLLVVSHDRYFLDRLVTTIVEIERCHS 240 Query: 241 RKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRASTTKRAQSRRKALD 300 +KYTGNYSRY++ KAAEYE +LKQYEKQQ+EISRME+F+QRN+VRASTTKRAQSRRKALD Sbjct: 241 KKYTGNYSRYIELKAAEYESQLKQYEKQQDEISRMENFIQRNLVRASTTKRAQSRRKALD 300 Query: 301 KMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFELRRGETA 360 KMER+DKPLGDLKKA FSFE ++MSGK+VL VRD+++AF E+ +PLFR SF+L RGET Sbjct: 301 KMERLDKPLGDLKKAHFSFEAEYMSGKDVLHVRDLSLAF-EQDKPLFRQVSFDLSRGETV 359 Query: 361 ALIGPNGIGKSTLLQCLTGTREPSTGTVNWGTKVKIAYYDQEQTRLNPRNTVLEELWSEY 420 ALIGPNG+GKSTLL+CL GT +P+ G++ WGTKVKI YYDQEQ+ LNP NTVLEELW Y Sbjct: 360 ALIGPNGVGKSTLLKCLIGTMKPTAGSLQWGTKVKIGYYDQEQSELNPSNTVLEELWGTY 419 Query: 421 PMLEEARIRTILGNFLFSGEDVLKKVAALSGGEKARVSLSKLMLRGANMLILDEPTNHLD 480 P +EEARIRT+LGNFLFSGEDVLKK+++LSGGEKARVSL+KLML ANMLILDEPTNHLD Sbjct: 420 PHMEEARIRTVLGNFLFSGEDVLKKISSLSGGEKARVSLAKLMLLEANMLILDEPTNHLD 479 Query: 481 LMSREVLESALIDFEGTLLFISHDRYFLNKMAERVLELHPGGIDQYLGNYDDYIEKKREL 540 L ++EVLESAL+D+EGTLLFISHDRYFLNKMAER++ELHP GI +LGNYDDY EKK+E+ Sbjct: 480 LFAKEVLESALMDYEGTLLFISHDRYFLNKMAERIIELHPDGIQHFLGNYDDYTEKKQEI 539 >B1DH50.1 B1DH50_9BACL ABC transporter related Length = 642 Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/555 (71%), Positives = 473/555 (85%) Query: 1 MLLQATGITKSYGIQSVLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 MLLQ + I+K+YGI +L IS+QV E+ERVGLVGVNGAGKST L+I+AGE+S+DSG IH Sbjct: 1 MLLQLSNISKNYGIDVILSDISMQVLERERVGLVGVNGAGKSTLLKIIAGELSYDSGAIH 60 Query: 61 KSKETTIGYLAQNSGLQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYE 120 K+KET IGYLAQNSGLQS++TI EEM AVFS LIEAE ELR+LE IADP L D+PKRYE Sbjct: 61 KAKETRIGYLAQNSGLQSNRTIIEEMRAVFSHLIEAEQELRELERQIADPALHDNPKRYE 120 Query: 121 DLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARIL 180 D+L+RY+R+SDWF++ GG+E+NTRI SVLHGMGFG F +T I+TLSGGQKTRLALARIL Sbjct: 121 DVLDRYSRKSDWFREQGGFEINTRINSVLHGMGFGSFAADTLISTLSGGQKTRLALARIL 180 Query: 181 LQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQS 240 LQAPDLLMLDEPTN+LDI TLTWLE YLRSY+G ILVVSHDRYFLD L TTI+EIERH + Sbjct: 181 LQAPDLLMLDEPTNYLDIPTLTWLEGYLRSYSGAILVVSHDRYFLDALATTIIEIERHAA 240 Query: 241 RKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRASTTKRAQSRRKALD 300 R+YTGNYSRY++ KAAEYE +KQ+EKQQ+EI++ME F+QRNIVRASTTKRAQSRRKAL+ Sbjct: 241 RRYTGNYSRYIELKAAEYEADMKQFEKQQDEIAKMEQFIQRNIVRASTTKRAQSRRKALE 300 Query: 301 KMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFELRRGETA 360 KM+ +D+PLGDLKKA F+FE + +GK+VL V D++V F +K LF++ SF+L R ET Sbjct: 301 KMDVLDRPLGDLKKARFTFEIERQTGKDVLDVADLSVKFPKKDRQLFQHVSFKLSRSETV 360 Query: 361 ALIGPNGIGKSTLLQCLTGTREPSTGTVNWGTKVKIAYYDQEQTRLNPRNTVLEELWSEY 420 ALIGPNGIGKSTLL+ L G R+P TGTV WG+ VK+ YYDQEQT L P NTVLEE+W Y Sbjct: 361 ALIGPNGIGKSTLLKVLVGQRQPQTGTVRWGSNVKLGYYDQEQTGLTPSNTVLEEVWGTY 420 Query: 421 PMLEEARIRTILGNFLFSGEDVLKKVAALSGGEKARVSLSKLMLRGANMLILDEPTNHLD 480 P +EEARIRT+LGNFLFSGEDVLK++++LSGGEKARVSL+KLML AN+LILDEPTNHLD Sbjct: 421 PHMEEARIRTVLGNFLFSGEDVLKRISSLSGGEKARVSLAKLMLEQANVLILDEPTNHLD 480 Query: 481 LMSREVLESALIDFEGTLLFISHDRYFLNKMAERVLELHPGGIDQYLGNYDDYIEKKREL 540 L S+EVLESAL+D++GTLLFISHDRYFLNKMAER++EL P G + +LGNYDD IEKK EL Sbjct: 481 LFSKEVLESALLDYDGTLLFISHDRYFLNKMAERIVELTPAGTEHFLGNYDDMIEKKAEL 540 Query: 541 EAIALEXXXXXSGAS 555 E LE + S Sbjct: 541 EEARLEAAAKLASKS 555 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 161/342 (47%), Gaps = 65/342 (19%) Query: 21 ISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIHKSKETTIGYLAQ-NSGLQSD 79 +S +++ E V L+G NG GKST L++L G+ +G + +GY Q +GL Sbjct: 350 VSFKLSRSETVALIGPNGIGKSTLLKVLVGQRQPQTGTVRWGSNVKLGYYDQEQTGLTPS 409 Query: 80 KTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYEDLLERYARRSDWFKDHGGY 139 T+ EE+ + + EA Sbjct: 410 NTVLEEVWGTYPHMEEA------------------------------------------- 426 Query: 140 EMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARILLQAPDLLMLDEPTNHLDIE 199 RIR+VL F I++LSGG+K R++LA+++L+ ++L+LDEPTNHLD+ Sbjct: 427 ----RIRTVLGNFLFSGEDVLKRISSLSGGEKARVSLAKLMLEQANVLILDEPTNHLDLF 482 Query: 200 TLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQSRKYTGNYSRYVDQKAAEYE 259 + LE L Y G +L +SHDRYFL+++ IVE+ + + GNY +++KA E Sbjct: 483 SKEVLESALLDYDGTLLFISHDRYFLNKMAERIVELTPAGTEHFLGNYDDMIEKKAELEE 542 Query: 260 IRLKQYEKQQEEISRMEDFVQRNIVRASTT----KRAQ-SRRKALDKMERIDKPLGDLKK 314 RL E +++ + +V A T+ K+A+ R L K+E++++ + L++ Sbjct: 543 ARL-------EAAAKLASKSNQPVVEAPTSYEMDKQAKREERSRLRKLEQLEQEIATLEE 595 Query: 315 ASFSFE---PDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFE 353 FE D + + ++++ EK L NA++E Sbjct: 596 QIAEFEVQLTDPAIFNDYMAIQEIQTKIEEKRASL--NAAYE 635 >C0ZK43.1 C0ZK43_BREBN Probable ABC transporter ATP-binding protein Length = 644 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/546 (59%), Positives = 422/546 (77%), Gaps = 2/546 (0%) Query: 1 MLLQATGITKSYGIQSVLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 +LLQA I K+YGI+++L ISLQ+ ERVGLVGVNGAGKST ++ILAGE+S+D G I Sbjct: 2 ILLQAEHIEKTYGIETILQDISLQIQTGERVGLVGVNGAGKSTLMKILAGELSYDKGIIR 61 Query: 61 KSKETTIGYLAQNSGLQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYE 120 K+ T+GYLAQNSGL+S+++I +E+L+VFS L + E ELR+LEA + DP + D KRY+ Sbjct: 62 IPKDVTLGYLAQNSGLESERSIWDELLSVFSHLQKEELELRELEAKMGDPAILADEKRYQ 121 Query: 121 DLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARIL 180 LLE Y+ RS+ FK+ GGY IR VLHG+ F +F TPI TLSGGQKTRLALA++L Sbjct: 122 QLLENYSHRSEAFKEKGGYSYEGAIRGVLHGLRFADFDYTTPIRTLSGGQKTRLALAKLL 181 Query: 181 LQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQS 240 LQ+P +L+LDEPTN+LDIETLTWLE YL++Y G ILVVSHDRYFLD+LVT + EIER ++ Sbjct: 182 LQSPTILLLDEPTNYLDIETLTWLETYLQNYQGAILVVSHDRYFLDKLVTVVYEIERTRA 241 Query: 241 RKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRASTTKRAQSRRKALD 300 +Y GNYSR++D+KAA E LK++EKQQEEI+++EDF+ RNI RA+TTKRAQSRRK L+ Sbjct: 242 TRYVGNYSRFLDEKAARLEQDLKRFEKQQEEIAKLEDFIARNIARATTTKRAQSRRKTLE 301 Query: 301 KMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFELRRGETA 360 K++R+DKP+ + K FSF+ MSG V++ +VA+ + + L + +FE+ R E Sbjct: 302 KIDRLDKPIMNNKSVHFSFDVAKMSGTIVMKANNVAIGYPDAV--LSQGLTFEIEREERV 359 Query: 361 ALIGPNGIGKSTLLQCLTGTREPSTGTVNWGTKVKIAYYDQEQTRLNPRNTVLEELWSEY 420 AL+GPNGIGKSTLL+ + G +++G+ V I YYDQE +N RNTVL E+W EY Sbjct: 360 ALVGPNGIGKSTLLKTIVEQLPKLRGDIHFGSNVTIGYYDQEHRNMNERNTVLGEIWDEY 419 Query: 421 PMLEEARIRTILGNFLFSGEDVLKKVAALSGGEKARVSLSKLMLRGANMLILDEPTNHLD 480 P + E +RT+LGNFLFSG+DV KK++ LSGGE+ARVSL+KLML+ AN LI DEPTNHLD Sbjct: 420 PNMLEKEVRTLLGNFLFSGDDVQKKISDLSGGERARVSLAKLMLKQANFLIFDEPTNHLD 479 Query: 481 LMSREVLESALIDFEGTLLFISHDRYFLNKMAERVLELHPGGIDQYLGNYDDYIEKKREL 540 + S+EVLE+AL D+ GT+LF+SHDRYFLNK+A RVLEL G+ YLGNYD ++EKK+EL Sbjct: 480 IFSKEVLENALYDYPGTILFVSHDRYFLNKIATRVLELTGDGVTSYLGNYDYFVEKKQEL 539 Query: 541 EAIALE 546 E +A E Sbjct: 540 EELAAE 545 >C5D4E5.1 C5D4E5_9BACI ABC transporter related Length = 644 Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/541 (57%), Positives = 409/541 (75%), Gaps = 2/541 (0%) Query: 1 MLLQATGITKSYGIQSVLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 ++LQ +TK +G +L I L++ K+R+ LVG NGAGKST L+I+AGEMS+DSG+I Sbjct: 2 IILQVNQLTKYFGADLILSNIKLEIQSKDRIALVGRNGAGKSTLLKIIAGEMSYDSGEII 61 Query: 61 KSKETTIGYLAQNSGLQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYE 120 K KE +IGYLAQ+SGL S +I EEM+ VF+PL E +LRQ+E + DP L D RYE Sbjct: 62 KPKEVSIGYLAQDSGLHSSLSIWEEMMTVFAPLKTIEKQLRQMELQMGDPDLIADSSRYE 121 Query: 121 DLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFP-PETPIATLSGGQKTRLALARI 179 LL+ Y + +K+ GGY+ IRS+LHG+ F ++ TP+ +LSGGQ+TRLAL ++ Sbjct: 122 KLLKDYDALQERYKEQGGYQYEADIRSILHGLQFAKYDYMTTPVQSLSGGQRTRLALGKL 181 Query: 180 LLQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQ 239 LL PDLL+LDEPTNHLD+ETLTWLE YL++Y G IL+VSHDRYFLD++VT + E+ R Sbjct: 182 LLMKPDLLILDEPTNHLDLETLTWLEQYLQTYPGAILIVSHDRYFLDKVVTQVYELSRTT 241 Query: 240 SRKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRASTTKRAQSRRKAL 299 ++YTGNYSRY++QKAAEYE K YEKQQEEI++++DF+QRNI RASTT+RAQSRRK L Sbjct: 242 LKRYTGNYSRYLEQKAAEYERERKLYEKQQEEIAKLQDFIQRNIARASTTRRAQSRRKQL 301 Query: 300 DKMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFELRRGET 359 +KMER++KP GD K ASFSF+ + SG +VL DVAV + E +PL RN F + RGE+ Sbjct: 302 EKMERMEKPAGDEKVASFSFDIERQSGNDVLIAEDVAVGYDEN-KPLIRNIRFRITRGES 360 Query: 360 AALIGPNGIGKSTLLQCLTGTREPSTGTVNWGTKVKIAYYDQEQTRLNPRNTVLEELWSE 419 AL+GPNGIGKSTLL+ + +G +G+ V+I YYDQ Q L+ VL+ELW E Sbjct: 361 IALVGPNGIGKSTLLKAIVNKLPLQSGHFRYGSNVQIGYYDQNQADLSSNKRVLDELWDE 420 Query: 420 YPMLEEARIRTILGNFLFSGEDVLKKVAALSGGEKARVSLSKLMLRGANMLILDEPTNHL 479 YP E IRT+LG+FLFSG+DVLK V+ALSGGEKAR++L+KLM++ AN LILDEPTNHL Sbjct: 421 YPDKTEKEIRTVLGSFLFSGDDVLKPVSALSGGEKARLALAKLMMQKANFLILDEPTNHL 480 Query: 480 DLMSREVLESALIDFEGTLLFISHDRYFLNKMAERVLELHPGGIDQYLGNYDDYIEKKRE 539 DL S+EVLE+ALI++ GT+LF+SHDRYF+N++A +V EL GI +YLG+YD Y+ KK E Sbjct: 481 DLDSKEVLENALIEYPGTILFVSHDRYFINRIATKVYELSSDGITEYLGDYDYYVAKKAE 540 Query: 540 L 540 + Sbjct: 541 M 541 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/253 (31%), Positives = 117/253 (46%), Gaps = 48/253 (18%) Query: 17 VLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIHKSKETTIGYLAQNSG- 75 ++ I ++ E + LVG NG GKST L+ + ++ SG IGY QN Sbjct: 347 LIRNIRFRITRGESIALVGPNGIGKSTLLKAIVNKLPLQSGHFRYGSNVQIGYYDQNQAD 406 Query: 76 LQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYEDLLERYARRSDWFKD 135 L S+K + +E+ + E E Sbjct: 407 LSSNKRVLDELWDEYPDKTEKE-------------------------------------- 428 Query: 136 HGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARILLQAPDLLMLDEPTNH 195 IR+VL F P++ LSGG+K RLALA++++Q + L+LDEPTNH Sbjct: 429 ---------IRTVLGSFLFSGDDVLKPVSALSGGEKARLALAKLMMQKANFLILDEPTNH 479 Query: 196 LDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQSRKYTGNYSRYVDQKA 255 LD+++ LE+ L Y G IL VSHDRYF++R+ T + E+ +Y G+Y YV +KA Sbjct: 480 LDLDSKEVLENALIEYPGTILFVSHDRYFINRIATKVYELSSDGITEYLGDYDYYVAKKA 539 Query: 256 AEYEIRLKQYEKQ 268 E+ EKQ Sbjct: 540 EMLELERLASEKQ 552 >O05519.2 YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein ydiF Length = 642 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/539 (57%), Positives = 407/539 (75%), Gaps = 5/539 (0%) Query: 1 MLLQATGITKSYGIQSVLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 M+LQ ++KS+G ++L+ I L+V ++R+ +VG NGAGKST L+I+AG++S++ G+I Sbjct: 2 MILQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEII 61 Query: 61 KSKETTIGYLAQNSGLQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRYE 120 K K+ T+GYLAQ++GL S TI+EE+L VF L E E+R +E +A A DP E Sbjct: 62 KPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMA----AADPGELE 117 Query: 121 DLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARIL 180 +++ Y R FKD GGY+ +RSVLHG+GF F T + +LSGGQKTRLAL ++L Sbjct: 118 SIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLL 177 Query: 181 LQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQS 240 L PDLL+LDEPTNHLDI+TLTWLE YL+ Y+G IL+VSHDRYFLD++V + E+ R +S Sbjct: 178 LTQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAES 237 Query: 241 RKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRASTTKRAQSRRKALD 300 +KY GNYS Y+DQKAA+YE LK YEKQQ+EI++++DFV RN+ RASTTKRAQSRRK L+ Sbjct: 238 KKYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLE 297 Query: 301 KMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPLFRNASFELRRGETA 360 +M+ + KPLGD K A+F F+ SG EVL+V+D+ +++ E PL SF L RGE+A Sbjct: 298 RMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISY-ENQPPLLTEVSFMLTRGESA 356 Query: 361 ALIGPNGIGKSTLLQCLTGTREPSTGTVNWGTKVKIAYYDQEQTRLNPRNTVLEELWSEY 420 AL+GPNGIGKSTLL+ L T +P GT+++G+ V + YYDQEQ L VL+ELW EY Sbjct: 357 ALVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEY 416 Query: 421 PMLEEARIRTILGNFLFSGEDVLKKVAALSGGEKARVSLSKLMLRGANMLILDEPTNHLD 480 P L E IRT LGNFLFSG+DVLK V +LSGGEKAR++L+KLML+ AN LILDEPTNHLD Sbjct: 417 PGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLD 476 Query: 481 LMSREVLESALIDFEGTLLFISHDRYFLNKMAERVLELHPGGIDQYLGNYDDYIEKKRE 539 L S+EVLE+ALID+ GTLLF+SHDRYF+N++A RVLEL I++YLG+YD Y EKK E Sbjct: 477 LDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKKTE 535 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 160/349 (45%), Gaps = 55/349 (15%) Query: 2 LLQATGITKSYGIQS-VLDGISLQVNEKERVGLVGVNGAGKSTFLQILAGEMSFDSGQIH 60 +L+ +T SY Q +L +S + E LVG NG GKST L+ L + D G I Sbjct: 326 VLRVQDLTISYENQPPLLTEVSFMLTRGESAALVGPNGIGKSTLLKTLIDTLKPDQGTIS 385 Query: 61 KSKETTIGYLAQNSG-LQSDKTIQEEMLAVFSPLIEAEAELRQLEADIADPGLADDPKRY 119 ++GY Q L S K + +E+ + PGL P++ Sbjct: 386 YGSNVSVGYYDQEQAELTSSKRVLDELWDEY-------------------PGL---PEK- 422 Query: 120 EDLLERYARRSDWFKDHGGYEMNTRIRSVLHGMGFGEFPPETPIATLSGGQKTRLALARI 179 IR+ L F P+ +LSGG+K RLALA++ Sbjct: 423 ------------------------EIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKL 458 Query: 180 LLQAPDLLMLDEPTNHLDIETLTWLEDYLRSYAGGILVVSHDRYFLDRLVTTIVEIERHQ 239 +LQ + L+LDEPTNHLD+++ LE+ L Y G +L VSHDRYF++R+ T ++E+ Sbjct: 459 MLQKANFLILDEPTNHLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSH 518 Query: 240 SRKYTGNYSRYVDQKAAEYEIRLKQYEKQQEEISRMEDFVQRNIVRA--STTKRAQSRRK 297 +Y G+Y Y ++K + E+ + QQEE + V+ + R+ + + R+ Sbjct: 519 IEEYLGDYDYYTEKKTEQLEL---EKMNQQEETDKTPATVKSDSKRSYEEEKEWKKKERQ 575 Query: 298 ALDKMERIDKPLGDLKKASFSFEPDFMSGKEVLQVRDVAVAFSEKAEPL 346 L ++E I+ + +++ + S + + EV Q + A E L Sbjct: 576 RLRRIEEIETTVQTIEE-NISRNDELLCDPEVYQDHEKVQAIHADNEKL 623 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,247,422,711 Number of extensions: 138354271 Number of successful extensions: 1040243 Number of sequences better than 1.0e-05: 46084 Number of HSP's gapped: 981813 Number of HSP's successfully gapped: 57446 Length of query: 565 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 424 Effective length of database: 1,732,333,088 Effective search space: 734509229312 Effective search space used: 734509229312 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)