BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0021.p
         (69 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE48.1 B3KE48_9BACI Twin-arginine translocation protein, TatA/...    66   9e-10
B1D671.1 B1D671_9BACL Twin-arginine translocation protein, TatA/...    58   2e-07
B4BKB8.1 B4BKB8_9BACI Twin-arginine translocation protein, TatA/...    56   1e-06
B3K4R3.1 B3K4R3_9BACI Twin-arginine translocation protein, TatA/...    55   2e-06
C1PC67.1 C1PC67_BACCO Twin-arginine translocation protein, TatA/...    54   3e-06

>B3KE48.1 B3KE48_9BACI Twin-arginine translocation protein, TatA/E family
          subunit
          Length = 78

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 10 FGPNKLPELGRAVGRTFREFKDGAREIINDXXXXXXXXXXXXXXXQTMTADLPQDRRLPE 69
          FGPNKLPELGRAVGRTFREFKDGAREII D                   A + +D+RLPE
Sbjct: 20 FGPNKLPELGRAVGRTFREFKDGAREIIADDAPAKKKEEAPQQAVAAEPAKI-EDKRLPE 78


>B1D671.1 B1D671_9BACL Twin-arginine translocation protein, TatA/E family
          subunit
          Length = 61

 Score = 58.2 bits (139), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 34/39 (87%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIND 39
          +++++ L++FGP+KLPELGRAVGRT  EFK  A+E+++D
Sbjct: 12 MILVVVLIIFGPSKLPELGRAVGRTLHEFKSSAKELVSD 50


>B4BKB8.1 B4BKB8_9BACI Twin-arginine translocation protein, TatA/E family
          subunit
          Length = 56

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIND 39
          L+V  ALL+FGP KLPELGRA G+T REFK+  + II+D
Sbjct: 10 LIVFFALLIFGPKKLPELGRAAGKTLREFKNATKGIIDD 48


>B3K4R3.1 B3K4R3_9BACI Twin-arginine translocation protein, TatA/E family
          subunit
          Length = 71

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 32/38 (84%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIN 38
          +++I+ L+LFGP+KLPELGRAVGRT  EFK  ARE++ 
Sbjct: 12 MILIVVLILFGPSKLPELGRAVGRTLSEFKASARELVG 49


>C1PC67.1 C1PC67_BACCO Twin-arginine translocation protein, TatA/E family
          subunit
          Length = 61

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/39 (56%), Positives = 34/39 (87%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIND 39
          +++++ALL+FGP+KLP+LGRA G+T REFK G R+ I++
Sbjct: 12 IILVVALLIFGPSKLPQLGRAAGQTLREFKKGVRDAIDE 50


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.145    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 297,866,242
Number of extensions: 6636730
Number of successful extensions: 12613
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 12614
Number of HSP's successfully gapped: 25
Length of query: 69
Length of database: 3,060,696,203
Length adjustment: 41
Effective length of query: 28
Effective length of database: 2,674,434,588
Effective search space: 74884168464
Effective search space used: 74884168464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)