BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0019.p
         (108 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE43.1 B3KE43_9BACI 10 kDa chaperonin                               169   7e-41
B1DH65.1 B1DH65_9BACL 10 kDa chaperonin                               152   1e-35
Q8CXL4.1 CH10_OCEIH 10 kDa chaperonin                                 134   3e-30
P28599.2 CH10_BACSU 10 kDa chaperonin                                 129   7e-29
A7Z206.1 CH10_BACA2 10 kDa chaperonin                                 129   7e-29

>B3KE43.1 B3KE43_9BACI 10 kDa chaperonin
          Length = 93

 Score =  169 bits (428), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 90/92 (97%)

Query: 16  MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKDGVRVPLEVKEG 75
           MI+PLGERVLVEP EQE+TT+FGIVLPDS+KEKPQEG++IAVGSG+LKDG RVPLEVKEG
Sbjct: 1   MIRPLGERVLVEPIEQEETTAFGIVLPDSAKEKPQEGKVIAVGSGSLKDGARVPLEVKEG 60

Query: 76  DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           DRV+FSKYAGTEIKYEGKEYLIMKESDIHAIL
Sbjct: 61  DRVIFSKYAGTEIKYEGKEYLIMKESDIHAIL 92


>B1DH65.1 B1DH65_9BACL 10 kDa chaperonin
          Length = 93

 Score =  152 bits (383), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 84/92 (91%)

Query: 16  MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKDGVRVPLEVKEG 75
           MI+PLGERVL+EP  +E+TT+ GIVLPD++KEKPQEG+++AVG+G LKDG RV LEV+ G
Sbjct: 1   MIRPLGERVLIEPIAKEETTASGIVLPDTAKEKPQEGKVVAVGAGTLKDGARVALEVQVG 60

Query: 76  DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           DRVLFSKYAGTEIKYEGKEYLIMKESDIHAI 
Sbjct: 61  DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIF 92


>Q8CXL4.1 CH10_OCEIH 10 kDa chaperonin
          Length = 93

 Score =  134 bits (337), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 83/92 (90%)

Query: 16  MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSGALKDGVRVPLEVKEG 75
           MIKPLG+RV++E  EQE+TT+ GIVLPDS+KEKPQEG+++AVGSG +++G ++ LEV EG
Sbjct: 1   MIKPLGDRVVIELVEQEETTASGIVLPDSAKEKPQEGKVVAVGSGRVENGEKIALEVSEG 60

Query: 76  DRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           DR++FSK+AGTE+KYEG EYLI++E+DI AI+
Sbjct: 61  DRIIFSKFAGTEVKYEGTEYLILRENDILAII 92


>P28599.2 CH10_BACSU 10 kDa chaperonin
          Length = 94

 Score =  129 bits (325), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 80/93 (86%), Gaps = 1/93 (1%)

Query: 16  MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSG-ALKDGVRVPLEVKE 74
           M+KPLG+RV++E  E E+ T+ GIVLPDS+KEKPQEG+I+A GSG  L+ G RV LEVKE
Sbjct: 1   MLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKE 60

Query: 75  GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           GDR++FSKYAGTE+KYEG EYLI++ESDI A++
Sbjct: 61  GDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93


>A7Z206.1 CH10_BACA2 10 kDa chaperonin
          Length = 94

 Score =  129 bits (325), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 80/93 (86%), Gaps = 1/93 (1%)

Query: 16  MIKPLGERVLVEPSEQEQTTSFGIVLPDSSKEKPQEGRIIAVGSG-ALKDGVRVPLEVKE 74
           M+KPLG+RV++E  E E+ T+ GIVLPDS+KEKPQEG+I+A GSG  L+ G RV LEVKE
Sbjct: 1   MLKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKE 60

Query: 75  GDRVLFSKYAGTEIKYEGKEYLIMKESDIHAIL 107
           GDR++FSKYAGTE+KYEG EYLI++ESDI A++
Sbjct: 61  GDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.137    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 658,897,163
Number of extensions: 25936057
Number of successful extensions: 49614
Number of sequences better than 1.0e-05: 2234
Number of HSP's gapped: 47271
Number of HSP's successfully gapped: 2276
Length of query: 108
Length of database: 3,060,696,203
Length adjustment: 76
Effective length of query: 32
Effective length of database: 2,344,699,063
Effective search space: 75030370016
Effective search space used: 75030370016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)