BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0014.p (427 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0FZ09.1 C0FZ09_9FIRM Putative uncharacterized protein 112 6e-23 B1KYL5.1 B1KYL5_CLOBM Putative membrane protein 108 9e-22 Q1A694.1 Q1A694_9FIRM Receptor histidine kinase 105 7e-21 C0FYX9.1 C0FYX9_9FIRM Putative uncharacterized protein 105 7e-21 B5CQB8.1 B5CQB8_9FIRM Putative uncharacterized protein 103 4e-20 >C0FZ09.1 C0FZ09_9FIRM Putative uncharacterized protein Length = 426 Score = 112 bits (280), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 115/212 (54%), Gaps = 10/212 (4%) Query: 196 ILHAQAERSRRILLEQQNTYYLNQYHLI-------RSMQEDSFKFQHDFKHILLGLRVKL 248 IL ++ + + +LE++ T Y Q H++ + + ED + +H+ + L+ L+ ++ Sbjct: 195 ILEVYSKITEKTMLEKEKTVYEQQIHMMTNNTKEQKKLMEDFHRERHNLINKLIVLKNEI 254 Query: 249 SSGEAAATAQELDTLLCRVESPTGNCNTGNLVIDSMINYKMQEAARYGITFTLELNIPPQ 308 GE +E+D ++ + + ++GN VID+++N K A GI F L++ IP + Sbjct: 255 EHGEKENVIREIDKIIENNHTESYISDSGNQVIDALLNTKYSIAKENGIQFLLKIFIPEE 314 Query: 309 LALDTTALCVILGNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQT 368 L ++ L V+LGNALDNAIEA + + I I M +SL I+NPY ++ Sbjct: 315 LPVNQCDLGVVLGNALDNAIEATEKCN--ENNKNIEIAMGIKKQSLVFVIKNPYEGSLKQ 372 Query: 369 TPSGGIRSAKSDHRAHGIGLKNIQKTIGERNG 400 SG + S K+D HG G+ +IQ T+ ++ G Sbjct: 373 DKSGKLISTKNDFHRHGYGISSIQ-TVADKYG 403 >B1KYL5.1 B1KYL5_CLOBM Putative membrane protein Length = 426 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 116/218 (53%), Gaps = 4/218 (1%) Query: 201 AERSRRILLEQQNTYYLNQYHLIRSMQEDSFKFQHDFKHILLGLRVKLSSGEAAATAQEL 260 A+++ +I + QQN YY Q++L++S + + +HD K+ LL + L ++ + + Sbjct: 211 AKQAEKIWIIQQNKYYERQFNLMKSSMKVTKAIKHDLKNHLLTVYSLLQKEKSEEALKHI 270 Query: 261 DTLLCRVESPTGNCNTGNLVIDSMINYKMQEAARYGITFTLELNIPPQLALDTTALCVIL 320 ++ S +GN IDS++N+K+QEA + I LNIP + + + + +IL Sbjct: 271 SDIIEVCNSQKEYVRSGNTAIDSVLNFKLQEARQKNIRICFNLNIPENIEIPSFHISIIL 330 Query: 321 GNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQTTPSGGIRSAKSD 380 GN LDNAI A + R I+ M Y L ++I NP+ I I + K D Sbjct: 331 GNLLDNAICAVDKL---ECNRYINFKMKYTKGRLIIKIDNPFNGEI-LMNGNRIVTTKLD 386 Query: 381 HRAHGIGLKNIQKTIGERNGLLDISYDHSFFQIEWVLF 418 HGIG+++I+ + + +G ++I +D++ F + +L+ Sbjct: 387 RNNHGIGIESIKIILQKYDGSMEIQHDNNIFSVTLLLY 424 >Q1A694.1 Q1A694_9FIRM Receptor histidine kinase Length = 431 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 18/283 (6%) Query: 145 WCLLFLVPLLSIATLLQ-------LSNSLFFRSYPQLFPVVPSXXXXXXXXXXXXSDRIL 197 W +F++P+ SI L++ +S +L F + + + D+I Sbjct: 157 WVQIFVIPVGSIVILVEIICHKESMSETLDFVAVLMVMLI--------NIFTYYLYDKIG 208 Query: 198 HAQAERSRRILLEQQNTYYLNQYHLIRSMQEDSFKFQHDFKHILLGLRVKLSSGEAAATA 257 +R R +L++Q+ YYL QY+ ++ + +F+H+ L ++ L G+ A Sbjct: 209 ETAEKRVREAVLQEQSEYYLRQYNENMNLWVEMSEFRHNMTERYLMEKMYLEKGDYEALE 268 Query: 258 QELDTLLCRVESPTGNCNTGNLVIDSMINYKMQEAARYGITFTLELNIPPQLALDTTALC 317 + D L + NTG DS+INYK A + I F +L IP +L ++T + Sbjct: 269 KYCDNSLEKFHKQRKVSNTGCFYFDSIINYKAAVAETFDIRFDTKLMIPRELKVETEDIG 328 Query: 318 VILGNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQTTPSGGIRSA 377 + LGN LDNAIEA + + ER + + + +L M + N Y + + + + I + Sbjct: 329 ICLGNLLDNAIEASKKV--KVEERAVYVEIRVDKRNLMMTVSNHYEEERKKSGNNYITTK 386 Query: 378 KSDHRAHGIGLKNIQKTIGERNGLLDISYDHSFFQIEWVLFGI 420 K H+ HG GL ++K NG + I + F++ +L+ I Sbjct: 387 KEKHK-HGFGLNIVRKISKGYNGEVIIDDRDNQFRVTVLLYEI 428 >C0FYX9.1 C0FYX9_9FIRM Putative uncharacterized protein Length = 431 Score = 105 bits (263), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 133/283 (46%), Gaps = 18/283 (6%) Query: 145 WCLLFLVPLLSIATLLQ-------LSNSLFFRSYPQLFPVVPSXXXXXXXXXXXXSDRIL 197 W +F++P+ SI L++ +S +L F + + + D+I Sbjct: 157 WVQIFVIPVGSIVILVEIICHKESMSETLDFVAVLMVMLI--------NIFTYYLYDKIG 208 Query: 198 HAQAERSRRILLEQQNTYYLNQYHLIRSMQEDSFKFQHDFKHILLGLRVKLSSGEAAATA 257 +R R +L++Q+ YYL QY+ ++ + +F+H+ L ++ L G+ A Sbjct: 209 ETAEKRVREAVLQEQSEYYLRQYNENMNLWVEMSEFRHNMTERYLMEKMYLEKGDYEALE 268 Query: 258 QELDTLLCRVESPTGNCNTGNLVIDSMINYKMQEAARYGITFTLELNIPPQLALDTTALC 317 + D L + NTG DS+INYK A + I F +L IP +L ++T + Sbjct: 269 KYCDNSLEKFHKQRKVSNTGCFYFDSIINYKAAVAETFDIRFDTKLMIPRELKVETEDIG 328 Query: 318 VILGNALDNAIEACQGITGPAPERQISIHMHYLNESLFMRIRNPYVQPIQTTPSGGIRSA 377 + LGN LDNAIEA + + ER + + + +L M + N Y + + + + I + Sbjct: 329 ICLGNLLDNAIEASKKV--KVEERAVYVEIRVDKRNLMMTVSNHYEEERKKSGNNYITTK 386 Query: 378 KSDHRAHGIGLKNIQKTIGERNGLLDISYDHSFFQIEWVLFGI 420 K H+ HG GL ++K NG + I + F++ +L+ I Sbjct: 387 KEKHK-HGFGLNIVRKISKGYNGEVIIDDRDNQFRVTVLLYEI 428 >B5CQB8.1 B5CQB8_9FIRM Putative uncharacterized protein Length = 423 Score = 103 bits (256), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/194 (29%), Positives = 102/194 (52%), Gaps = 8/194 (4%) Query: 220 YHLIRSMQEDSFKFQHDFKHILLGLRVKLSSGEAAATAQELDTLLCRVESPTGNCNTGNL 279 Y + Q++ + +HD K+ L G+ L +GE +E++TLL ++ + T N Sbjct: 228 YRELEQHQQEIRRIRHDIKNELSGIYGYLENGEVGEGKKEIETLLQQMTAAEQKIFTANA 287 Query: 280 VIDSMINYKMQEAARYGITFTLELNIPPQLALDTTALCVILGNALDNAIEACQGITGPAP 339 V++ ++N K+Q+ I + +++IP QL + T L V+LGN LDNAIEACQ G Sbjct: 288 VVNGILNLKLQKMEMAQIEYEFDIHIPEQLKIQGTDLGVLLGNLLDNAIEACQEFQG--- 344 Query: 340 ERQISIHMHYLNESLFMRIRNPYVQPIQTTPSGGIRSAKSDHRAHGIGLKNIQKTIGERN 399 E++I + M Y N + + NP + +T +++ K D HG G+ +I + + + + Sbjct: 345 EKKIRLLMEYQNSGVVIHCENPCNEDTET-----LQTKKKDKINHGFGMGSIAQIVKKYD 399 Query: 400 GLLDISYDHSFFQI 413 G + F++ Sbjct: 400 GFWEYQMKSGLFKV 413 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,061,274,617 Number of extensions: 71782089 Number of successful extensions: 208115 Number of sequences better than 1.0e-05: 227 Number of HSP's gapped: 207967 Number of HSP's successfully gapped: 227 Length of query: 427 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 288 Effective length of database: 1,751,175,118 Effective search space: 504338433984 Effective search space used: 504338433984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 133 (55.8 bits)