BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0013.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0FZ10.1 C0FZ10_9FIRM Putative uncharacterized protein 117 1e-24 B1KYL4.1 B1KYL4_CLOBM LytTr DNA-binding domain family 112 3e-23 C4Z4I6.1 C4Z4I6_9FIRM Putative uncharacterized protein 92 3e-17 Q92DL2.1 Q92DL2_LISIN Lin0801 protein 83 2e-14 C0C4W5.1 C0C4W5_9CLOT Putative uncharacterized protein 80 1e-13 >C0FZ10.1 C0FZ10_9FIRM Putative uncharacterized protein Length = 261 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/247 (31%), Positives = 124/247 (50%), Gaps = 11/247 (4%) Query: 1 MIHIAICDDDPRSAGLVESLILDNRERFSEKIDMSVYFSAERFVEALGQGSIFXXXXXXX 60 M++IAICDDD A +ES++ + + + KID V++S V + G F Sbjct: 20 MLNIAICDDDDLIAHQIESVLHNISDEENVKIDTDVFYSGNNLVREISSGKKFDLIYMDI 79 Query: 61 XXXXXXXXXXXHVLRADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKL 120 +R D + + +ISSY++Y ++LF + FI+KP+ + S Sbjct: 80 QMENGDGITAAKNIRKKD--EDVMIIFISSYDRYVMELFRLDVFSFIRKPIDRDSFAQIF 137 Query: 121 IPAVQKAIRIRQQGKQHFLPVQLKGKERLVPLRDIHYLESRIRRISLMTRDG-EIQYYGT 179 + A Q+ + HF + K +E V ++I Y ES+ R+I++ RDG + + G Sbjct: 138 LEANQRIC-----SRNHFFSFKYKSQEYKVLSKEILYFESKARQINIHVRDGNKYVFNGK 192 Query: 180 LGEEARKLPSG--YFIRIHQSYIVNFYSVKEISARRIVLITGDELPVSEKNSIPVRKAYM 237 L E + L SG F+RIHQSY+VN+ +K S + LI G+ LP+SE K Y Sbjct: 193 LSEVEKGLSSGKVTFLRIHQSYLVNYLLIKSRSKSNVTLINGEVLPISEDRQKEFSKEYS 252 Query: 238 K-FRGNL 243 + RG++ Sbjct: 253 RLLRGDI 259 >B1KYL4.1 B1KYL4_CLOBM LytTr DNA-binding domain family Length = 238 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 69/242 (28%), Positives = 124/242 (51%), Gaps = 7/242 (2%) Query: 1 MIHIAICDDDPRSAGLVESLILDNRERFSEKIDMSVYFSAERFVEALGQGSIFXXXXXXX 60 M +AICDD+P G +E+++L+ ++ E+I++ V++S E + +G F Sbjct: 1 MFKVAICDDEPIICGDIENVLLNYQKYNFEEIEIEVFYSGEELCRYIEKGYSFDLIFLDI 60 Query: 61 XXXXXXXXXXXHVLRADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKL 120 +R + + ++ YIS + Y QLFDV+P F+ KP+ ++ +++ L Sbjct: 61 EMKTMNGVEVGKKIRQEMDDYITKIVYISGKDSYDRQLFDVQPMHFLSKPLNREKIIEDL 120 Query: 121 IPAVQKAIRIRQQGKQHFLPVQLKGKERL-VPLRDIHYLESRIRRISLMTRDGEIQYYGT 179 A++ + KQ + KG E L +P+++I Y ES R+I ++T GE +YGT Sbjct: 121 HLAMKLLL------KQRVVFSYKKGYEVLRIPIKNIIYFESFNRKIKIVTTKGEDMFYGT 174 Query: 180 LGEEARKLPSGYFIRIHQSYIVNFYSVKEISARRIVLITGDELPVSEKNSIPVRKAYMKF 239 + E ++ FIRIH+SYI+N+ V +++ + LP+ + VRK + F Sbjct: 175 IDEIFSQIAKYQFIRIHRSYIINYIHVSRFKYDEVIMSSSSCLPIGQSRRSEVRKLQLAF 234 Query: 240 RG 241 Sbjct: 235 EN 236 >C4Z4I6.1 C4Z4I6_9FIRM Putative uncharacterized protein Length = 241 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 6/224 (2%) Query: 4 IAICDDDPRSAGLVESLILDNRERFSEKIDMSVYFSAERFVEALGQGSIFXXXXXXXXXX 63 I ICDD+ + +E+ I S+ +++ V+ SAE F+ + + + Sbjct: 5 IGICDDEISTCSEIETCIQQRFRNKSDSVEVFVWNSAESFINDVPEKTDLDILFLDIELP 64 Query: 64 XXXXXXXXHVLRADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKLIPA 123 + +R N + YISS Y L LFD+ P F KP+ +K+ Sbjct: 65 EKNGVDVGYYIRESMMNVGMHIIYISSKTSYALDLFDIHPYNFFVKPLS----CEKICSE 120 Query: 124 VQKAIRIRQQGKQHFLPVQLKGKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEE 183 ++K +++ +Q K+ F + K + + V +I YL+S +I+++ D E +Y G L +E Sbjct: 121 IEKLLQLDRQDKRFFTYIYNKSQYK-VLYGNIIYLKSDKHQINIICSDSEKRYVGKLKQE 179 Query: 184 ARKLPSGYFIRIHQSYIVNFYSVKEISARRIVLITGDELPVSEK 227 +LP YF+ ++QS +VN +KE IV+ GD + +S+ Sbjct: 180 LNRLPV-YFVMVNQSIVVNIRHIKEFLLNEIVMDNGDYIAISKN 222 >Q92DL2.1 Q92DL2_LISIN Lin0801 protein Length = 240 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 15/242 (6%) Query: 2 IHIAICDDDPRSAGLVESLILDNRERFSEKIDMSVYFSAERFVEALGQGSIFXXXXXXXX 61 + IAICDDD +ES+IL + + + +++ +E + F Sbjct: 3 LKIAICDDDKVVCAQIESMILQYAQESGFDVTIHIFYDGSSLMEGIQNDDNFDLIYLDIE 62 Query: 62 XXXXXXXXXXHVLRADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKLI 121 +R + Q+ Y+S QY QLFDV+P FI KP+ + L+ Sbjct: 63 MDGINGVDVGMTIRDKLRDHKMQIVYVSGKGQYDRQLFDVQPLLFIPKPIEESKLV---- 118 Query: 122 PAVQKAIRIRQQGKQHFLPVQLKGKER----LVPLRDIHYLESRIRRISLMTRDGEIQYY 177 K+I + ++ K P K+R V + DI Y E+ R + +MT DG + Sbjct: 119 ----KSINLARE-KLALTPKLYHYKKRKEYFSVWMEDIIYFENSGRNVKIMTIDGTDLFV 173 Query: 178 GTLGEEARK-LPSGYFIRIHQSYIVNFYSVKEISARRIVLITGDELPVSEKNSIPVRKAY 236 G + + A++ LP G FI+I QS IVN+ V + S I+LI +++ + + V++ + Sbjct: 174 GNIKDIAKEVLPYG-FIQISQSIIVNYNFVSKYSREEIILINKEKIAIPKNKRNGVKEQF 232 Query: 237 MK 238 ++ Sbjct: 233 LR 234 >C0C4W5.1 C0C4W5_9CLOT Putative uncharacterized protein Length = 232 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 10/170 (5%) Query: 75 RADDANDPAQLFYISSYEQYHLQLFDVRPSGFIKKPVGQKSLLDKLIPAVQKAIRIRQQG 134 R ++ ++ Y++ YE Y Q F+V P F+ KPV ++ + + A Q+ Sbjct: 66 RIRKSDRSVRIIYVTGYEDYMRQSFNVHPFSFLLKPVSEEDIRRQFSEACAYGREREQKR 125 Query: 135 KQHFLPVQLKGKERLVPLRDIHYLESRIRRISLMTRDGEIQYYGTLGEEARKLPSGYFIR 194 HF G + DI+Y+E R+I ++T+ GE G + E AR++ F Sbjct: 126 TLHFAAF---GGTIETDVYDIYYMEYVSRKIRMVTQSGEYILKGKISELARRMEGYGFAA 182 Query: 195 IHQSYIVNFYSVKEISARRIVLITGDELPVSEKNSIPVRKAYMKFRGNLA 244 H+S+ VN Y VK I I ++ GD +P+S+K S +FRG L Sbjct: 183 PHKSFTVNLYHVKSIKGYDIYMVNGDIIPLSQKRST-------QFRGKLG 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,296,374,356 Number of extensions: 47881567 Number of successful extensions: 103840 Number of sequences better than 1.0e-05: 332 Number of HSP's gapped: 103991 Number of HSP's successfully gapped: 332 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)