BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0010.p (327 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DET9.1 B1DET9_9BACL Peptide methionine sulfoxide reductase EC=... 413 e-113 B3K934.1 B3K934_9BACI Peptide methionine sulfoxide reductase EC=... 382 e-104 C5DAV5.1 C5DAV5_9BACI Methionine-R-sulfoxide reductase 377 e-102 B3KJC7.1 B3KJC7_9BACI Peptide methionine sulfoxide reductase EC=... 370 e-101 Q67NJ7.1 Q67NJ7_SYMTH Peptide methionine sulfoxide reductase 353 8e-96 >B1DET9.1 B1DET9_9BACL Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 318 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 196/316 (62%), Positives = 233/316 (73%), Gaps = 3/316 (0%) Query: 4 LNEKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXA 63 +N RTE+ATFAGGCFWCMV+PFD+LPGI SVVSGYTGGHT NP A Sbjct: 2 VNSNQRTEMATFAGGCFWCMVQPFDKLPGIDSVVSGYTGGHTINPTYEEVGTETTGHVEA 61 Query: 64 VQITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXX 123 VQIT++PELFPYERLLDIYWQLIDPTD GGQF+DRG SYRTAIFVHNE Sbjct: 62 VQITFQPELFPYERLLDIYWQLIDPTDHGGQFLDRGSSYRTAIFVHNEEQRKKAESSKQA 121 Query: 124 XXXXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPE 183 RFK PI+TEILPA PFY AE HQDYY TH Y LY +GSGR EF E+ WN+ + Sbjct: 122 LQKSKRFKKPILTEILPAMPFYPAEDEHQDYYNTHRRSYNLYHEGSGRKEFFERSWNTMK 181 Query: 184 DQKRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATG 243 D+ +LR QLT LQY VTQ++ +EP ++NAYWN R+G+YVDVI+GDPLFSS DK+D+ TG Sbjct: 182 DKDQLRQQLTELQYNVTQNRDTEPAFQNAYWNNEREGLYVDVINGDPLFSSRDKYDAGTG 241 Query: 244 WPSFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALR 303 WP+F+ PI G IR+E+D S G+VRTALRSR+S ++LGHL D +P YR+NSA+LR Sbjct: 242 WPTFSKPIEEGWIRKESDLSNGQVRTALRSRISKSHLGHLVQDRNQP---QYRINSASLR 298 Query: 304 FIPKEELEANGLGRYV 319 FIP E+ E G GRY+ Sbjct: 299 FIPVEQFETEGYGRYI 314 >B3K934.1 B3K934_9BACI Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 321 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 183/313 (58%), Positives = 218/313 (69%) Query: 9 RTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAVQITY 68 +T LATFAGGCFWCMVKPFDELPGI+S+VSGYTGGHTENP AVQI + Sbjct: 7 KTSLATFAGGCFWCMVKPFDELPGILSLVSGYTGGHTENPTYEEVGTETTGHYEAVQIRF 66 Query: 69 EPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXXXXXX 128 P++FPY RLLDIYW+LIDPTD GQFMDRG SYR+AIFVH+E Sbjct: 67 NPDVFPYSRLLDIYWRLIDPTDAEGQFMDRGASYRSAIFVHDEAQREQAEASKRILQLSG 126 Query: 129 RFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPEDQKRL 188 RFK IVT ILPA PFY AE +HQ+YY TH DY Y +GSGRD F ++HW+ EDQ L Sbjct: 127 RFKGKIVTPILPAGPFYPAEDVHQNYYNTHRYDYNRYYEGSGRDSFAKRHWSRKEDQDEL 186 Query: 189 RNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGWPSFT 248 R +LT +QY VTQ EP Y+N YWN GIY DV++GDPLFSS D++D+ TG P+F Sbjct: 187 RRRLTAIQYAVTQEGLDEPAYDNPYWNHASRGIYADVVNGDPLFSSTDQYDAGTGLPAFR 246 Query: 249 GPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALRFIPKE 308 P+ G I ++ D GG+VRTAL RLSG+YLGHL+ DGP+P HY+VNSAALRFIP+E Sbjct: 247 KPLHEGYISKKGDLRGGKVRTALYGRLSGSYLGHLYHDGPQPGGLHYQVNSAALRFIPEE 306 Query: 309 ELEANGLGRYVGV 321 L G G + G+ Sbjct: 307 ALVREGYGEFAGL 319 >C5DAV5.1 C5DAV5_9BACI Methionine-R-sulfoxide reductase Length = 323 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/311 (56%), Positives = 219/311 (70%) Query: 11 ELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAVQITYEP 70 ELATFAGGCFWCMV PF+E PGI+S++SGYTGGH ENP AVQIT++P Sbjct: 4 ELATFAGGCFWCMVSPFEEQPGIISIISGYTGGHKENPTYEEVCSQTTGHYEAVQITFDP 63 Query: 71 ELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXXXXXXRF 130 ++FPYE+LLDIYW+ IDPTD GGQF DRG SYRTAIF HNE RF Sbjct: 64 DVFPYEKLLDIYWRQIDPTDDGGQFHDRGESYRTAIFYHNEKQRLLAEKSKRELEESGRF 123 Query: 131 KDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPEDQKRLRN 190 PIVT+ILPA+ FY AE HQ+Y+K PL YK+Y SGRD FL++HW E ++ LR Sbjct: 124 SKPIVTKILPASTFYPAEEYHQNYHKKRPLHYKMYYIASGRDAFLKEHWRDKEREEMLRK 183 Query: 191 QLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGWPSFTGP 250 +LT LQ+EVTQ +EPP++N YWN R+GIYVD++SG+PLFS+ D+FD+ GWPSFT P Sbjct: 184 KLTPLQFEVTQRNGTEPPFDNPYWNNKREGIYVDIVSGEPLFSTKDQFDAGCGWPSFTKP 243 Query: 251 IAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALRFIPKEEL 310 + I+ E D S G +RT +RSR + ++LGH+F DGPEP Y +NSAALRFIPKE+L Sbjct: 244 LHPENIKTELDLSHGMIRTEVRSRKADSHLGHVFNDGPEPTGLRYCINSAALRFIPKEDL 303 Query: 311 EANGLGRYVGV 321 E G G Y+ + Sbjct: 304 EKEGYGEYLSL 314 >B3KJC7.1 B3KJC7_9BACI Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 321 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/315 (55%), Positives = 217/315 (68%) Query: 5 NEKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAV 64 N +ELATFAGGCFWCMV PFDELPGI+ VVSGYTGGH ENP AV Sbjct: 3 NRSTPSELATFAGGCFWCMVSPFDELPGILKVVSGYTGGHKENPTYEEVCSDTTGHYEAV 62 Query: 65 QITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXX 124 QITY PE+FPYE+LL+++WQ IDPTD+GGQF DRG SYRTAIF H E Sbjct: 63 QITYNPEIFPYEKLLELFWQQIDPTDEGGQFHDRGTSYRTAIFYHTEEQRELAEQSKQAV 122 Query: 125 XXXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPED 184 RF PIVT I+PA+ FY AE HQDY+K +P YK Y KGSGR++F+EQHW+ P D Sbjct: 123 AASGRFDGPIVTPIIPASTFYEAEEYHQDYHKKNPSHYKRYRKGSGREDFIEQHWSEPVD 182 Query: 185 QKRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGW 244 L+ +LT +QYEVTQ+ A+EPP+ N YW+ +GIYVD++SG+PLFSS DK+D+ GW Sbjct: 183 TAELKQRLTPIQYEVTQNNATEPPFHNEYWDHHGEGIYVDIVSGEPLFSSTDKYDAGCGW 242 Query: 245 PSFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALRF 304 PSFT PI I+ + D + VRT +RS+ ++LGH+F DGP P Y +NSAALRF Sbjct: 243 PSFTRPIREYNIKEKMDLTHMMVRTEVRSKKGDSHLGHVFDDGPGPNGLRYCINSAALRF 302 Query: 305 IPKEELEANGLGRYV 319 +PKEE++ G G Y+ Sbjct: 303 VPKEEMQREGYGEYL 317 >Q67NJ7.1 Q67NJ7_SYMTH Peptide methionine sulfoxide reductase Length = 319 Score = 353 bits (907), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 173/313 (55%), Positives = 206/313 (65%) Query: 6 EKNRTELATFAGGCFWCMVKPFDELPGIVSVVSGYTGGHTENPXXXXXXXXXXXXXXAVQ 65 ++ R ELATFAGGCFWCMV PF+E PGI VVSGYTGGH ENP AVQ Sbjct: 2 DEKRLELATFAGGCFWCMVSPFEEQPGIYKVVSGYTGGHKENPTYEEVCSGTTGHFEAVQ 61 Query: 66 ITYEPELFPYERLLDIYWQLIDPTDKGGQFMDRGYSYRTAIFVHNEXXXXXXXXXXXXXX 125 IT++P++FPYERLLD++WQ IDPTD GQF DRG YRTAIF HNE Sbjct: 62 ITFDPDVFPYERLLDLFWQQIDPTDPDGQFYDRGPQYRTAIFYHNEEQRRLAEKSKAELE 121 Query: 126 XXXRFKDPIVTEILPAAPFYSAEALHQDYYKTHPLDYKLYLKGSGRDEFLEQHWNSPEDQ 185 RF PI T ILPA PFY AE HQ Y++ +P Y+ Y SGRD+F+ +HW PE Sbjct: 122 ASGRFDKPIATLILPAGPFYPAEEYHQGYHRKNPFHYQRYRAASGRDDFIRKHWRDPERD 181 Query: 186 KRLRNQLTRLQYEVTQHKASEPPYENAYWNEFRDGIYVDVISGDPLFSSADKFDSATGWP 245 LR +LT +QYEVTQ A+E P+ YWN F +GIYVDV+SG+PLFSS DKFD+ GWP Sbjct: 182 AELRRRLTPIQYEVTQLGATERPFTGEYWNHFEEGIYVDVVSGEPLFSSRDKFDAGCGWP 241 Query: 246 SFTGPIAGGLIRREADYSGGEVRTALRSRLSGAYLGHLFFDGPEPAKQHYRVNSAALRFI 305 SFT P+ I D S G VRT +RSR + ++LGH+F DGP P Y +NSAALRFI Sbjct: 242 SFTRPLVPENIVERLDLSHGMVRTEVRSRGADSHLGHVFPDGPAPTGLRYCINSAALRFI 301 Query: 306 PKEELEANGLGRY 318 PKE+LE G G + Sbjct: 302 PKEDLEKEGYGEF 314 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,006,561,491 Number of extensions: 82400798 Number of successful extensions: 154126 Number of sequences better than 1.0e-05: 3521 Number of HSP's gapped: 150154 Number of HSP's successfully gapped: 3610 Length of query: 327 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 191 Effective length of database: 1,779,438,163 Effective search space: 339872689133 Effective search space used: 339872689133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)