BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0008.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D4Q6.1 B1D4Q6_9BACL DinB family protein 162 9e-39 O07939.1 YIST_BACSU Uncharacterized protein yisT 154 3e-36 C0ZIU9.1 C0ZIU9_BREBN Putative uncharacterized protein 151 3e-35 C3ALJ9.1 C3ALJ9_BACMY DinB 149 1e-34 C3BTL3.1 C3BTL3_9BACI DinB 148 2e-34 >B1D4Q6.1 B1D4Q6_9BACL DinB family protein Length = 168 Score = 162 bits (411), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 77/159 (48%), Positives = 107/159 (67%), Gaps = 1/159 (0%) Query: 19 YEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVLAEVPNEKI 78 +EYHVWAN+RLF HL+QLP+E + A+V SVFPSV+ HLY+ ++L+++VL + + Sbjct: 9 FEYHVWANNRLFEHLKQLPEEAYAAEVQSVFPSVAAVLEHLYVRDELWLAVL-QGEEADL 67 Query: 79 FPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHFSE 138 + EE +G T + + +A++FR + DLDK TI HPR+GS+ S Sbjct: 68 IGLVNRKAEEVKGMTAASLEERCNVIADRFRTYMAGVEDLDKLTTITHPRFGSMTAPLSG 127 Query: 139 ILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYLVEQ 177 I++HVVNHGTYHRGNV A+LRQQGH GV TDY+ +L Q Sbjct: 128 IIQHVVNHGTYHRGNVAAILRQQGHPGVATDYIIFLYGQ 166 >O07939.1 YIST_BACSU Uncharacterized protein yisT Length = 169 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 71/165 (43%), Positives = 112/165 (67%), Gaps = 2/165 (1%) Query: 17 QLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVLAEVPNE 76 Q Y+YH WAN ++FTH+E LP+E + +V SVFPSVS H+ + ++++VL+ V + Sbjct: 6 QFYDYHSWANKKIFTHIENLPEETAYQEVKSVFPSVSDVLLHMCRADYIWLNVLSGVAYQ 65 Query: 77 KIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHF 136 +I + AQG +++ + + Q+ D R +DL++ T++HP+ G+L++ + Sbjct: 66 EIIDSAGK-LQSAQGNMA-AIKQHAAELESQYHDFFSRQTDLEQTFTMQHPKLGTLESTY 123 Query: 137 SEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYLVEQRDGQ 181 ++ + HVVNHGTYHRGNVTAMLRQ H+GVPTDYM+YL E+R+ + Sbjct: 124 ADTILHVVNHGTYHRGNVTAMLRQLDHSGVPTDYMYYLYEKRESK 168 >C0ZIU9.1 C0ZIU9_BREBN Putative uncharacterized protein Length = 171 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 68/160 (42%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 17 QLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVLAEVPNE 76 +LYEYHVWAN+++F L+++P+ V +V SVFP+++QT H+ + +++ + E Sbjct: 7 RLYEYHVWANEKVFKRLQEVPEGVSEQEVPSVFPTITQTLAHILKTDYVWLLAMKGDSYE 66 Query: 77 KIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYGSLDTHF 136 ++ P++ +E +GK V E+R+LF+ A+QFRD + S D A HP G++ + Sbjct: 67 EVGPKVGVLLQELKGKNVHELRKLFAESAQQFRDFFGQISMEDTA-PYTHPALGTVHARY 125 Query: 137 SEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYLVE 176 ++I++HV NHGTYHRGN++AMLRQ GH G +DY+FYL E Sbjct: 126 ADIVQHVANHGTYHRGNISAMLRQMGHAGASSDYIFYLFE 165 >C3ALJ9.1 C3ALJ9_BACMY DinB Length = 170 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/164 (40%), Positives = 108/164 (65%) Query: 11 MLQHPHQLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVL 70 M Q+ + ++YH WAN R+ HL +LPKEV++ KV SVFPS+ + H+Y+ + +++ VL Sbjct: 1 MKQYMIKQFDYHTWANKRILEHLRELPKEVYYQKVQSVFPSIEKVLIHIYVVDCVWLHVL 60 Query: 71 AEVPNEKIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYG 130 + + E+ + KT+DE++ LF V +Q++ L + D+++ + +++P G Sbjct: 61 NGKSMAEALQVGKELQEQVENKTMDELKNLFHKVTQQYKVFLDKQKDMNQVILLDNPYAG 120 Query: 131 SLDTHFSEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYL 174 L T SE+++HVVNHGTYHRGN+TAMLRQ G+ TD++FYL Sbjct: 121 RLKTSVSELVQHVVNHGTYHRGNITAMLRQLGYPSTMTDFVFYL 164 >C3BTL3.1 C3BTL3_9BACI DinB Length = 170 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 112/169 (66%), Gaps = 1/169 (0%) Query: 11 MLQHPHQLYEYHVWANDRLFTHLEQLPKEVFHAKVTSVFPSVSQTFGHLYMYEQLYMSVL 70 M Q+ + ++YH WAN R+ HL +LPKEV++ +V SVFPS+ + H+Y+ + +++ +L Sbjct: 1 MKQYMIKQFDYHTWANKRILEHLRELPKEVYYQEVQSVFPSIEKVLIHIYVVDCVWLHIL 60 Query: 71 AEVPNEKIFPRIPDWTEEAQGKTVDEMRRLFSSVAEQFRDLLRRTSDLDKAMTIEHPRYG 130 + + E+A+ KT+DE++ LF V +Q++ L + D+++ + +++P G Sbjct: 61 NGKSMAEALQVGKELQEQAENKTMDELKSLFHKVTQQYKVFLDKQKDMNQVILLDNPYAG 120 Query: 131 SLDTHFSEILRHVVNHGTYHRGNVTAMLRQQGHTGVPTDYMFYL-VEQR 178 L T SE+++HVVNHGTYHRGN+TAMLRQ G+ TD++FYL EQ+ Sbjct: 121 RLKTSVSELVQHVVNHGTYHRGNITAMLRQLGYPSTMTDFVFYLHAEQK 169 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.135 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,111,135,147 Number of extensions: 42771557 Number of successful extensions: 113651 Number of sequences better than 1.0e-05: 149 Number of HSP's gapped: 113501 Number of HSP's successfully gapped: 149 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)