BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0006.p (180 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9V3.1 C0Z9V3_BREBN Conserved hypothetical membrane protein 170 5e-41 B3K6V1.1 B3K6V1_9BACI Putative uncharacterized protein 160 4e-38 Q9K7N0.1 Q9K7N0_BACHD BH3331 protein 97 6e-19 Q8D4M9.1 Q8D4M9_VIBVU Putative uncharacterized protein 89 2e-16 Q7MG77.1 Q7MG77_VIBVY Putative uncharacterized protein VVA0092 79 2e-13 >C0Z9V3.1 C0Z9V3_BREBN Conserved hypothetical membrane protein Length = 189 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 86/179 (48%), Positives = 103/179 (57%) Query: 1 LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60 LHDVFGEKQS FPE+T +LP+WRS LAL+L+FDIFSGC+A Sbjct: 10 LHDVFGEKQSIGSIAAILLFGGVLTTALYLRFPELTESLPIWRSTLALLLVFDIFSGCLA 69 Query: 61 NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120 NFT STSNFYAARK NR N+ YSI VWAYTI GAF VNA+ G Sbjct: 70 NFTISTSNFYAARKKNRIVFIAIHVHIILVALLLQQNLAYSIGVWAYTIVGAFAVNALFG 129 Query: 121 RPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTACLLFMLKVLFSFSVDHYRKAISNAGEQ 179 SQ+FVA + P++L CL FM+KVLFSF+V+HY K I + G + Sbjct: 130 NRSQLFVAGILLSVGLGWIPLLPGMHPFLLITCLFFMVKVLFSFAVNHYGKVIDDTGTE 188 >B3K6V1.1 B3K6V1_9BACI Putative uncharacterized protein Length = 185 Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 78/176 (44%), Positives = 101/176 (57%) Query: 1 LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60 LH+VFGE+QS VFP++ +LP+WR +LAL+ +FDIF GCIA Sbjct: 10 LHEVFGEQQSVGTILVILAFGGCLTTAASLVFPDILHSLPLWRGILALLFIFDIFCGCIA 69 Query: 61 NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120 NFT STSNFYAARK R +T++ Y++ +WAYTI GA IVNA++G Sbjct: 70 NFTRSTSNFYAARKKQRIVFIAIHVHILLVAVLLDTDMAYAVGIWAYTITGAVIVNALIG 129 Query: 121 RPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTACLLFMLKVLFSFSVDHYRKAISNA 176 + SQ F+ IQPYML A LFMLKVL+SF++DHY A+ A Sbjct: 130 KSSQHFIGGLLLSIGIGGTFLLSSIQPYMLMAGTLFMLKVLYSFAIDHYGGAVEKA 185 >Q9K7N0.1 Q9K7N0_BACHD BH3331 protein Length = 174 Score = 97.1 bits (240), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 66/128 (51%), Gaps = 1/128 (0%) Query: 1 LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60 LHDVFGEK S +P++ LP WRS +A +L+FDIFSGCIA Sbjct: 10 LHDVFGEKPSRGEIIFTLAFGGVLTTALFLAYPDIYEGLPFWRSFVAFLLMFDIFSGCIA 69 Query: 61 NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120 NFT STSN+YA R + + ++ VWAYTI GAFIVN + Sbjct: 70 NFTRSTSNYYAIDHKKRIVFLVIHVHLIVVALLIDVPLWPAVVVWAYTIGGAFIVNGLDK 129 Query: 121 RPSQVFVA 128 R Q+FVA Sbjct: 130 R-HQLFVA 136 >Q8D4M9.1 Q8D4M9_VIBVU Putative uncharacterized protein Length = 181 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Query: 1 LHDVFGEKQSXXXXXXXXXXXXXXXXXXXXVFPEMTGNLPVWRSVLALVLLFDIFSGCIA 60 LH+V GEKQS V + W+ + +L+ D+ +GC+A Sbjct: 10 LHEVLGEKQSLLEIVSIFAFAFVGSAAIYGVLYRPSSPEVTWQVAMGFILIVDVLAGCVA 69 Query: 61 NFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVMG 120 NFT T+ +YA+R+++R +I + VW YTI A +VN++ G Sbjct: 70 NFTRGTNLYYASRRSSRFMFIAIHFHVIAIAWLLGESILLAWMVWIYTITSALVVNSLNG 129 Query: 121 RPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTACLLFMLKVLFSFSVDHYRK 171 Q+FV+ +P+ L L FM+KV+FSF+VDHY K Sbjct: 130 HRLQLFVSASLMCFGLLLLLLLPL-EPWFLACSLFFMIKVVFSFAVDHYTK 179 >Q7MG77.1 Q7MG77_VIBVY Putative uncharacterized protein VVA0092 Length = 195 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 5/174 (2%) Query: 1 LHDVFGEKQSXXXXXXXXXXXXXXXXXXX-XVFPEMTGNLPVWRSVLALVLLFDIFSGCI 59 LH+VFGEKQS ++ M L W+ L VL+ D+ +GC+ Sbjct: 24 LHEVFGEKQSALEIACVFAFAFVGTAIVYWHLYLPMNAELN-WKVALGFVLIADVLAGCV 82 Query: 60 ANFTASTSNFYAARKTNRXXXXXXXXXXXXXXXXXNTNIGYSIAVWAYTIAGAFIVNAVM 119 ANFT T+ +YAAR ++R ++ + +W TIA A ++N++ Sbjct: 83 ANFTKGTNQYYAARPSSRFTFIAIHFHIIAIAWLLGGSLLSAWIIWGNTIAAAMVINSLK 142 Query: 120 GRPSQVFVAXXXXXXXXXXXXXXXDIQPYMLTAC-LLFMLKVLFSFSVDHYRKA 172 G Q+F+A L AC L FM KV+FSF+VDHY A Sbjct: 143 GHKFQLFIAANLLCYGLLLLLILPLEP--WLLACSLFFMTKVMFSFAVDHYANA 194 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 673,416,248 Number of extensions: 15418730 Number of successful extensions: 33683 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 33669 Number of HSP's successfully gapped: 5 Length of query: 180 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 53 Effective length of database: 1,864,227,298 Effective search space: 98804046794 Effective search space used: 98804046794 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)