BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0005.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9V2.1 C0Z9V2_BREBN Probable transcriptional regulator 276 1e-72 B3K6V0.1 B3K6V0_9BACI Regulatory protein TetR 256 6e-67 Q9K7M9.1 Q9K7M9_BACHD BH3332 protein 182 1e-44 Q2BDW4.1 Q2BDW4_9BACI Transcriptional regulator (TetR family) pr... 110 8e-23 Q9KE56.1 Q9KE56_BACHD Transcriptional regulator (TetR family) 109 2e-22 >C0Z9V2.1 C0Z9V2_BREBN Probable transcriptional regulator Length = 198 Score = 276 bits (705), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 131/194 (67%), Positives = 160/194 (82%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MNG+ERRKQ K++QI+S +F+LFSK+GFQKVSVNEIAQ A+VSPATIYNYFGTKEQLY D Sbjct: 1 MNGFERRKQNKIDQIYSAAFQLFSKHGFQKVSVNEIAQNAKVSPATIYNYFGTKEQLYAD 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 ML+ WMD QLEQYE+IL+S SFPEKTK+IMLLE KNL ++DE AP +E GL + + Sbjct: 61 MLMNWMDKQLEQYERILDSGSSFPEKTKDIMLLESKNLHTLTDELQNAPFSELSGLLQRI 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 E E+K+ FF KFVALGKQEGYI + T+EMM+MYFTMYKNELGRHW AS+ E T++ Sbjct: 121 ESEYEQKIRHFFTKFVALGKQEGYIQGDLTEEMMMMYFTMYKNELGRHWEASDRERVTLS 180 Query: 184 MDQWLKLFFYGLGG 197 M+QW+ +FF+GL G Sbjct: 181 MEQWVDMFFFGLVG 194 >B3K6V0.1 B3K6V0_9BACI Regulatory protein TetR Length = 200 Score = 256 bits (655), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 121/194 (62%), Positives = 157/194 (80%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 MNGYERRK KKMEQ+F +F+LFS++G+QKVSVNEIAQ+A VSPATIYNYFGTK+QLY + Sbjct: 1 MNGYERRKHKKMEQVFDAAFQLFSRHGYQKVSVNEIAQQAGVSPATIYNYFGTKDQLYLE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 M++YW D QLE YE+IL+S+ SF EKT+EIMLLE KNL +S+EF ++E+ G+ + + Sbjct: 61 MIMYWTDKQLEVYERILDSARSFAEKTREIMLLEAKNLTFLSEEFRNFQTSEERGISQTI 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 ++YSEEKV FFMKFVALGKQEGYIH +QT+E+ + YF+M+ NELGR W + N E + Sbjct: 121 QRYSEEKVKDFFMKFVALGKQEGYIHKDQTEEVTMQYFSMFMNELGRRWDSGNREYVNGS 180 Query: 184 MDQWLKLFFYGLGG 197 M+ ++LFFYGL G Sbjct: 181 METLMELFFYGLAG 194 >Q9K7M9.1 Q9K7M9_BACHD BH3332 protein Length = 195 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 94/192 (48%), Positives = 125/192 (65%), Gaps = 1/192 (0%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 M+G+ERRKQKKMEQIF+ +F L + YG+ KVS+NEIA EARVSPATI+NYFGTKE+LY Sbjct: 1 MDGFERRKQKKMEQIFTAAFSLMATYGYAKVSINEIATEARVSPATIFNYFGTKEKLYKA 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 L +W++ QL YE +L S FPEK +I + E K LK + A + +M+ Sbjct: 61 TLDHWIEQQLSAYEGVLYSDRPFPEKVADIFVREAKQLKAFAHH-TSAKNGVDASPWQMI 119 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 + SEEKV FF+K + +GKQEGYI + M YF+MY NEL R + + + + Sbjct: 120 LESSEEKVQTFFLKMIEIGKQEGYIATAYSVSTMQRYFSMYMNELTRCFQEEDNDDISRQ 179 Query: 184 MDQWLKLFFYGL 195 +D+ L LFFYGL Sbjct: 180 IDELLHLFFYGL 191 >Q2BDW4.1 Q2BDW4_9BACI Transcriptional regulator (TetR family) protein Length = 199 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 112/199 (56%), Gaps = 11/199 (5%) Query: 3 KMNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYG 62 K++G++RRK++K I + KLF G KVS++EIA+EA VS TIYNYF +K +L Sbjct: 3 KLDGFQRRKEQKQRHILEAAIKLFMDSGIHKVSISEIAKEAHVSQVTIYNYFESKHKLIH 62 Query: 63 DMLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEF----MKAPSAEQVG 118 ++ +Y++D ++EQ++ S+ +FP+K K+I+ + +N I +EF MK S E Sbjct: 63 EVFLYYVDKASSEFEQLISSNDAFPDKVKKIIFNKKENANGIHEEFYQYMMKEYSVEGNY 122 Query: 119 LERMMEQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEE 178 ++++ E+K + F + G ++GYI+ + + E M+ Y M K R S Sbjct: 123 IDKIY----EDKAIPLFKELFRQGHEQGYINPDLSFESMLFYVQMMKEYFQREEVYSKAL 178 Query: 179 GTTINMDQWLKLFFYGLGG 197 T + +FFYG+ G Sbjct: 179 PLT---EDITNIFFYGIIG 194 >Q9KE56.1 Q9KE56_BACHD Transcriptional regulator (TetR family) Length = 201 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 65/194 (33%), Positives = 101/194 (52%), Gaps = 3/194 (1%) Query: 4 MNGYERRKQKKMEQIFSVSFKLFSKYGFQKVSVNEIAQEARVSPATIYNYFGTKEQLYGD 63 M+G++RRK++K I + LF +YG QKVS+ EIA+ A VS TIYNYF +K L + Sbjct: 1 MDGFQRRKEQKKRDILEAALSLFMEYGLQKVSIAEIAKNANVSQVTIYNYFESKHNLTHE 60 Query: 64 MLIYWMDNQLEQYEQILESSLSFPEKTKEIMLLEVKNLKIISDEFMKAPSAEQVGLERMM 123 + +Y+MD + +EQ + S FPEK KEIM + + + I +EF + E E + Sbjct: 61 VFLYYMDKAVRDFEQTVYSDKPFPEKIKEIMFRKKEVARRIHEEFYQYLMKEYTANETIA 120 Query: 124 EQYSEEKVMRFFMKFVALGKQEGYIHLEQTDEMMVMYFTMYKNELGRHWTASNEEGTTIN 183 E + ++ F GK++GY+ + E ++ Y M + + E Sbjct: 121 ENDYMQNALQHFDHLFQEGKEQGYVDPSLSHEAIIFYIKMLNEYIQKEEVY---EKILPL 177 Query: 184 MDQWLKLFFYGLGG 197 + KLFFYG+ G Sbjct: 178 TEDITKLFFYGIMG 191 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,131,761,739 Number of extensions: 42512042 Number of successful extensions: 136891 Number of sequences better than 1.0e-05: 185 Number of HSP's gapped: 137051 Number of HSP's successfully gapped: 185 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)