BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0004.p (165 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q818T9.1 Q818T9_BACCR Putative uncharacterized protein 120 3e-26 B3KFB8.1 B3KFB8_9BACI YjdF 120 5e-26 C3BPP6.1 C3BPP6_9BACI Putative uncharacterized protein 118 2e-25 C3DPU6.1 C3DPU6_BACTS Putative uncharacterized protein 117 3e-25 B1UWC7.1 B1UWC7_BACAN Putative uncharacterized protein 116 7e-25 >Q818T9.1 Q818T9_BACCR Putative uncharacterized protein Length = 161 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 10 VSSLPPLGMSIVSIQLR-GMDMKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEE 68 +S P GMS +S L+ G+ M LT+YHDGQ++VG++ ++QGKL RYIFGAEP DEE Sbjct: 1 MSVTFPSGMSRISNLLKEGLSMDLTVYHDGQFFVGIITCKEQGKLYGARYIFGAEPSDEE 60 Query: 69 ILQFIRNKVSELISRLXXXXXXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEY 128 +L F+ + E R+ RQA E+ K + AQEA+ L Y Sbjct: 61 VLMFVNGSLLEHFQHFAKCGVEVKEKQRPKNIKRIIRQAAKEINIKRFTK-AQEAISLSY 119 Query: 129 EKRKQERRTGSKQQLEAALARKRELKVLKAKEKHRG 164 E KQE++ SK++ EA R+R +KV KAK+KHRG Sbjct: 120 ELHKQEKKVQSKEKREAEKERRRLMKVQKAKQKHRG 155 >B3KFB8.1 B3KFB8_9BACI YjdF Length = 138 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 92/138 (66%), Gaps = 2/138 (1%) Query: 30 MKLTIYHD--GQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELISRLXXX 87 MKLT+ D +YW+GV+E ++QG+LKA R+IFG EPKD EIL+F+ K+ EL++ Sbjct: 1 MKLTVLFDESCKYWIGVIEQEEQGRLKACRHIFGNEPKDPEILEFVSEKMMELMNLTKVG 60 Query: 88 XXXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQERRTGSKQQLEAAL 147 RLARQA+ E+ ++G+SS+AQEA+KL+ E RK +R+ ++QQ Sbjct: 61 TDTKRSKNTRINPKRLARQASREIAQRGLSSHAQEAIKLDLESRKLQRKVHNRQQNLVEN 120 Query: 148 ARKRELKVLKAKEKHRGR 165 RK +L+V KAK+KHRG+ Sbjct: 121 ERKYQLRVQKAKKKHRGK 138 >C3BPP6.1 C3BPP6_9BACI Putative uncharacterized protein Length = 135 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/135 (46%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 30 MKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFIRNKVSELISRLXXXXX 89 MKLT+YHDGQ++VG++ED +G L A RYIFGAEP DEEIL F+ N + + Sbjct: 1 MKLTVYHDGQFFVGMIEDTHKGILYAARYIFGAEPSDEEILVFVNNTLLTYFNHFAKCGV 60 Query: 90 XXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQERRTGSKQQLEAALAR 149 R+ R+A E+ K + AQEA+ L YE KQE+R SK+Q EA + Sbjct: 61 KVEEKKRPKSIKRIIREAAKEMHTKSFTK-AQEAISLSYELHKQEKRVQSKEQREAEKQK 119 Query: 150 KRELKVLKAKEKHRG 164 KR +KV KAK+KHRG Sbjct: 120 KRLIKVQKAKQKHRG 134 >C3DPU6.1 C3DPU6_BACTS Putative uncharacterized protein Length = 339 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/151 (43%), Positives = 89/151 (58%), Gaps = 2/151 (1%) Query: 15 PLGMSIVSIQLR-GMDMKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEEILQFI 73 P GMS +S L+ G+ M+LT+YHDGQ++VG++ ++QGKL RYIFGAEP DEE+L F+ Sbjct: 189 PSGMSRISNFLKEGLSMELTVYHDGQFFVGIITCKEQGKLYGARYIFGAEPSDEEVLMFV 248 Query: 74 RNKVSELISRLXXXXXXXXXXXXXXXXXRLARQATNEVRRKGVSSYAQEALKLEYEKRKQ 133 + E R+ RQ E K + AQEA+ L YE KQ Sbjct: 249 NGSLLEHFQHFAKCGVEVKEKQRPKNIKRIIRQTAKETNVKRFTK-AQEAISLSYELHKQ 307 Query: 134 ERRTGSKQQLEAALARKRELKVLKAKEKHRG 164 E++ SK++ EA R+R +KV KAK+KHRG Sbjct: 308 EKKVQSKEKREAEKERRRLIKVQKAKQKHRG 338 >B1UWC7.1 B1UWC7_BACAN Putative uncharacterized protein Length = 189 Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 93/158 (58%), Gaps = 6/158 (3%) Query: 10 VSSLPPLGMSIVSIQLR-GMDMKLTIYHDGQYWVGVLEDQDQGKLKAVRYIFGAEPKDEE 68 +S P GMS +S L+ G+ M LT+YHDGQ++VG++ +++GKL RYIFGAEP DEE Sbjct: 34 MSVTFPSGMSRISNFLKEGLSMDLTVYHDGQFFVGIITCKEKGKLYGARYIFGAEPSDEE 93 Query: 69 ILQFIRNKVSELISRLXXXXXXXXXXXXXXXXXRLARQATNEVRRKGVSSY--AQEALKL 126 +L F+ + + R+ RQA EV VS + AQEA+ L Sbjct: 94 VLIFVNGSMLAYFQQFAKCGVEVKEKQRPKNIKRIIRQAVKEV---NVSRFTKAQEAISL 150 Query: 127 EYEKRKQERRTGSKQQLEAALARKRELKVLKAKEKHRG 164 YE KQE++ SK++ EA R+R +KV KAK+KHRG Sbjct: 151 SYELHKQEKKVQSKEKREAEKQRRRLIKVQKAKQKHRG 188 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 734,081,558 Number of extensions: 23359672 Number of successful extensions: 106614 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 106440 Number of HSP's successfully gapped: 160 Length of query: 165 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 40 Effective length of database: 1,883,069,328 Effective search space: 75322773120 Effective search space used: 75322773120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)