BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0002.p (804 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DK63.1 B1DK63_9BACL UvrD/REP helicase 1072 0.0 B3KDB7.1 B3KDB7_9BACI UvrD/REP helicase 915 0.0 C2W8Y8.1 C2W8Y8_BACCE UvrD/REP helicase 831 0.0 C3B4I7.1 C3B4I7_BACMY UvrD/REP helicase 819 0.0 C3AMA2.1 C3AMA2_BACMY UvrD/REP helicase 819 0.0 >B1DK63.1 B1DK63_9BACL UvrD/REP helicase Length = 812 Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 516/797 (64%), Positives = 643/797 (80%), Gaps = 6/797 (0%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 RL+ VK KL I ELEP++ QL QA++IR+ FWEEVTVNTS+DEDFEETFF+INQQ+A Sbjct: 12 RLNEVKVKLKEKITELEPEVDQLYGQASNIRRHFWEEVTVNTSSDEDFEETFFSINQQAA 71 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LSERER+H++ QQWK++ RL SPYFGR+DF E EQVYIG+SSF +DG++FL Sbjct: 72 LLSERERTHEKRRQQWKSLKRLQQSPYFGRIDFKESDMNEAEQVYIGLSSFLASDGMNFL 131 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWRTPIASLYYDY PG A+Y TPGG I G M LKRQY+I+DG L + FD+S+TIGD + Sbjct: 132 VYDWRTPIASLYYDYSPGPASYATPGGHIHGDMELKRQYRIKDGKLLNFFDASVTIGDSM 191 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQQVLG GAN QMKSIVATIQKEQNAIIRND S+MLIVQG AGSGKTSAALQR AYLLYK Sbjct: 192 LQQVLGQGANNQMKSIVATIQKEQNAIIRNDASRMLIVQGVAGSGKTSAALQRAAYLLYK 251 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 HR+RLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGS +LEDPF+Q Sbjct: 252 HRERLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSAMKLEDPFEQ 311 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 IEYVLT + Y+AR++GI+YKASEA+L +L++Y+VWL +EGM F SIRFRDR LI+ + Sbjct: 312 IEYVLTQESAVGYEARVDGIRYKASEAFLHSLQKYAVWLSKEGMLFKSIRFRDRELITSK 371 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 Q+ +FY YDAS+RLANRI L+Q+W+L+EL + + E A+WV +EL+YLD +QY E +S Sbjct: 372 QLYEQFYGYDASVRLANRIILLQEWVLKELRKFARNELAAEWVDQELDYLDNDQYVEAYS 431 Query: 433 ML----HKDRGVFDFAEKYAR-IDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPL 487 + +D +FD +E+YA+ +D + + ++ FDF+E++E+LL +MIVKE F+PL Sbjct: 432 EILKRFQRDEELFDVSERYAKALDRANKFTNQGEDQIFDFSEQQEDLLRQMIVKEHFKPL 491 Query: 488 RRNVKQFSFIDMLGLYSQLFS-DEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYED 546 RR VK+ F+++ GLYSQLF +E+AY MT+ AEVP +WPEIC TK+KL EL YED Sbjct: 492 RRMVKKMKFVNVNGLYSQLFDEEESAYNRMTEGAEVPANWPEICRQTKEKLDNQELFYED 551 Query: 547 ATPYLYLKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFT 606 ATPYL+LKEL+EG+R NT VRHIF+DEGQDYS FQY FLK+LFP ARMTVLGDF QAIFT Sbjct: 552 ATPYLFLKELIEGSRMNTVVRHIFVDEGQDYSPFQYAFLKKLFPNARMTVLGDFGQAIFT 611 Query: 607 QATNLHGIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKP 666 Q++ L G SPL++LYGEE ++ L++SYRST+EIVEFT+ +LPGGE IVPFER G+KP Sbjct: 612 QSSKLGGGDSPLLKLYGEENSTLIPLLQSYRSTKEIVEFTRLMLPGGEEIVPFERHGKKP 671 Query: 667 TLTRLESSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITK 726 +T S + ++ D+ +L++EG SIAVI K AA S EAYEAL + G++++RL+T Sbjct: 672 LITTAGSREALLRQLVHDLESLKAEGNRSIAVIAKNAAESKEAYEALTSYGMEDIRLVTT 731 Query: 727 NTPTFDKGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTA 786 T TF+ GI+VIPAYLAKGVEFDAV IYDAS +SY+RE+ERKLFYTACTRAMH+L LY Sbjct: 732 ETLTFESGIMVIPAYLAKGVEFDAVAIYDASSKSYNRESERKLFYTACTRAMHQLNLYIC 791 Query: 787 EEWTPFIQAVDTSLYEL 803 EW P+++++ + LYEL Sbjct: 792 GEWAPYLKSLRSELYEL 808 >B3KDB7.1 B3KDB7_9BACI UvrD/REP helicase Length = 693 Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/621 (69%), Positives = 520/621 (83%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 RL+ V+EKL + I LEP ++ L DQAA+IR+RFWEEVTVNTSTDE+FEETF+TI QQ+A Sbjct: 21 RLEQVREKLKARIGVLEPVVTGLSDQAAEIRRRFWEEVTVNTSTDEEFEETFYTIKQQAA 80 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LSERER + L QQWKN N+LLPSPYFGRVDFLEDG ++EQ+YIGVSSF D DG++FL Sbjct: 81 ILSERERRQRLLTQQWKNFNQLLPSPYFGRVDFLEDGMNLSEQIYIGVSSFIDEDGMNFL 140 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWRTPIASLYYD+ PG A+Y TP G+I+G M LKRQYQI +G +++MFD++LTIGDEL Sbjct: 141 VYDWRTPIASLYYDHSPGAASYITPMGQISGRMELKRQYQIHNGQIRNMFDANLTIGDEL 200 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQQ+L GA++QMKSIV+TIQ+EQNAIIRND+S++LIVQGAAGSGKTSAALQRVAYLLYK Sbjct: 201 LQQMLAKGADSQMKSIVSTIQREQNAIIRNDRSRLLIVQGAAGSGKTSAALQRVAYLLYK 260 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +RD L ADQIVLFSPNP+FNSYVS+VLPELGEENMQQTT QEYL+YWLG + RLEDPFDQ Sbjct: 261 NRDSLKADQIVLFSPNPIFNSYVSSVLPELGEENMQQTTLQEYLEYWLGPSLRLEDPFDQ 320 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 IEYVLT Q P Y+ R+ GIQYKASE++++AL+ Y+ WL REGM F IRFR+R LI+ E Sbjct: 321 IEYVLTAQSTPNYETRLQGIQYKASESFMKALQNYAQWLGREGMLFKGIRFRERDLITAE 380 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 Q++ +FYSYD S+ LANR+ +QKWLL+EL+ LE+ E A WV EEL+YLD E YAEVF Sbjct: 381 QMRTQFYSYDPSLSLANRVEQLQKWLLKELSLLERKELKASWVVEELSYLDTELYAEVFG 440 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 LHKDR VFD AE YA ++EI NK R DEGDFDFA REEELL++ IVK+ F+PLR+ V+ Sbjct: 441 ELHKDREVFDIAEHYAVVNEIKSNKRRGDEGDFDFAGREEELLSQRIVKKSFKPLRQTVR 500 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 + SFID GLY QLF D AAYRE T E+++P WPEIC TK+KL R EL YEDATPYLY Sbjct: 501 KLSFIDAHGLYVQLFGDVAAYREKTKESDIPAMWPEICKQTKEKLDRLELFYEDATPYLY 560 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LKEL+EG RTNT++RH+F+DEGQDYS FQYE++K+LFPRARM+VLGDF QAIF Q+T L Sbjct: 561 LKELIEGVRTNTEIRHVFVDEGQDYSPFQYEYIKKLFPRARMSVLGDFGQAIFMQSTKLQ 620 Query: 613 GIGSPLVRLYGEEETSQFLLV 633 G SPL+RLYGE +TS LV Sbjct: 621 GDDSPLLRLYGEADTSLIRLV 641 >C2W8Y8.1 C2W8Y8_BACCE UvrD/REP helicase Length = 786 Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/784 (52%), Positives = 539/784 (68%), Gaps = 24/784 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 R++ V K+ I LE S IRK FW++VTVN T ED ET +I QQ+ Sbjct: 14 RVEDVVGKIEKHIDTLEHYTSATTKDVVQIRKHFWDDVTVNVDTTEDAIETAASIKQQAE 73 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LSERE+SH+ Q K + RL SPYFGRVDFLEDG+ + +Y+G+ SF D FL Sbjct: 74 LLSEREQSHRHAYNQLKGLKRLQQSPYFGRVDFLEDGEKSEDAIYLGIHSFYDEQTEQFL 133 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWR PI+SLYYDY G A Y P I+G M LKRQY IR+G + MFD+ +TIGD+L Sbjct: 134 VYDWRAPISSLYYDYSVGRAKYVAPNDTISGEMTLKRQYVIRNGQIISMFDTGVTIGDKL 193 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQ+VLG AN QMKSIV+TIQKEQN IIRN+KS++L+VQGAAGSGKTSAALQRVAYLLY+ Sbjct: 194 LQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLLYR 253 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +RD L ADQIVLFSPN MFNSYVSTVLPELGE+NM+QTTFQEYL+ + F LEDPF Q Sbjct: 254 YRDTLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLESHIDKKFELEDPFTQ 313 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EYVLT + Y+ R+ GI+YKAS +++ + +Y +L+REGM F I+FR VLIS E Sbjct: 314 MEYVLTRMEEKNYETRLEGIKYKASTDFIEVVDQYVAYLQREGMLFKDIKFRGNVLISKE 373 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 Q+K KFY +D+SIR+ NRI L+ +WLL+E+ + EK+E+ WV+EE+ LD E YA+V+ Sbjct: 374 QMKEKFYEFDSSIRIPNRIKLISEWLLKEVRKQEKIERKELWVEEEIQLLDKETYAKVYH 433 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L ++ G FD ERE+++L ++VKE F+PL+R VK Sbjct: 434 QLQRE--------------------EEHSNGSFDDFEREQKMLAAIVVKEHFKPLKRRVK 473 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 FI L LY QLF D A +++ +E ++ + W EIC T + + + YEDATPYLY Sbjct: 474 NLRFIHTLALYIQLFKDPAFAKQLVEEHKLSQRWNEICKETIENIQNLYMSYEDATPYLY 533 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 LK+ +E + NT V+HIFIDE QDYS FQY FLKR+FP +MT+LGDF+Q I+ A+ Sbjct: 534 LKDQLEEVQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-- 591 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 S L LYGEE + + +L RSYRST++I+EFTK L+ G+ I PF+R+G KP + +E Sbjct: 592 NEFSQLSTLYGEELSERIVLKRSYRSTKQIIEFTKQLITDGDEIEPFQRNGNKPIIMEVE 651 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 ++ I LQ +G+ +IAVI KTA S EAY AL A ++RLI K T +FD Sbjct: 652 GKAALHHKVTEQIQQLQRDGHKTIAVICKTAEESEEAYHALQASL--QVRLIKKETSSFD 709 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +G+L++P+YL+KGVEFDAV+IYDAS + Y RE+ERKLFYTACTRAMH L +Y+ E F Sbjct: 710 EGVLIVPSYLSKGVEFDAVIIYDASKKIYSRESERKLFYTACTRAMHELYIYSVGEINAF 769 Query: 793 IQAV 796 +++V Sbjct: 770 LRSV 773 >C3B4I7.1 C3B4I7_BACMY UvrD/REP helicase Length = 782 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/789 (52%), Positives = 536/789 (67%), Gaps = 25/789 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 R+ V K+ I LE S IRK FW++VTVN E+ ET +I QQ+ Sbjct: 14 RVKEVVGKIEKHIDTLEQYTSAATKDVVQIRKHFWDDVTVNVDNTEEAIETAASIKQQAE 73 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LSERE+SH+ Q K + RL SPYFGRVDFLEDG+ + +Y+G+ SF D FL Sbjct: 74 LLSEREQSHRHAYNQLKGLQRLQQSPYFGRVDFLEDGEKSEDAIYLGIHSFYDEQTEQFL 133 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWR PI+SLYYDY G A YE P I+G M LKRQY IR+G + MFD+ +TIGD+L Sbjct: 134 VYDWRAPISSLYYDYSVGRAKYEAPNDTISGEMTLKRQYVIRNGRIVSMFDTGVTIGDKL 193 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQ+VLG AN QMKSIV+TIQKEQN IIRN+KS++L+VQGAAGSGKTSAALQRVAYLLY+ Sbjct: 194 LQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLLYR 253 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R+ L ADQIVLFSPN MFNSYVSTVLPELGE+NM+QTTFQEYL+ + F LEDPF Q Sbjct: 254 YRETLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLERHIDKKFELEDPFTQ 313 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EYVLT + YK R+ GI+YKAS +++ + +Y +L+REGM F I+FR VLIS E Sbjct: 314 MEYVLTRMEEKSYKTRLEGIRYKASSDFIEVVDQYVSYLKREGMLFKDIKFRGEVLISKE 373 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 QIK +FY +D SIR+ NRI L+ +WLL+EL EK+E+ WV+EE+ LD E YA+V Sbjct: 374 QIKEQFYKFDPSIRIPNRIKLISEWLLKELKEQEKIERKKLWVEEEVQLLDKETYAKVHQ 433 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L K + D G FD ERE+ +L ++VK+ F+PLRR V+ Sbjct: 434 KLQKRQEYSD--------------------GTFDDFEREQNMLAAIVVKKYFKPLRRRVE 473 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 + FI LY QLF D +++ +E E+P+ W EIC T +K+ + YEDATPYLY Sbjct: 474 KLQFIHTPALYMQLFKDPQFAKQLVEENELPQKWDEICGETIEKMQGFYMAYEDATPYLY 533 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 +K+ +E + NT V+HIFIDE QDYS FQY FLKR+FP +MT+LGDF+Q I+ A+ Sbjct: 534 MKDQLEELQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-- 591 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 S L LYGEE + + +L RSYRST++I+EFTK L+ G E I PF+R G++P +T ++ Sbjct: 592 NEFSQLSTLYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDE-IEPFQREGKQPIITEVK 650 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 ++I I L+ G+ +IAVI KTA S EAY AL +RLI K T +FD Sbjct: 651 EGEAHHKKIVDQIEQLKQSGHRTIAVICKTAEESEEAYYALQTSL--PVRLIKKETSSFD 708 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +GIL+IP+YL+KGVEFDAV+IYDAS + Y RE+ERKLFYTACTRAMH L +Y+ E F Sbjct: 709 EGILIIPSYLSKGVEFDAVIIYDASEEKYSRESERKLFYTACTRAMHELYIYSVGEMNEF 768 Query: 793 IQAVDTSLY 801 +Q+V Y Sbjct: 769 LQSVSPKTY 777 >C3AMA2.1 C3AMA2_BACMY UvrD/REP helicase Length = 782 Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/789 (52%), Positives = 536/789 (67%), Gaps = 25/789 (3%) Query: 13 RLDLVKEKLSSAIVELEPKISQLKDQAADIRKRFWEEVTVNTSTDEDFEETFFTINQQSA 72 R+ V K+ I LE S IRK FW++VTVN E+ ET +I QQ+ Sbjct: 14 RVKEVVGKIEKHIDTLEQYTSAATKDVVQIRKHFWDDVTVNVDNTEEAIETAASIKQQAE 73 Query: 73 VLSERERSHKRLVQQWKNMNRLLPSPYFGRVDFLEDGQGITEQVYIGVSSFADTDGLSFL 132 +LSERE+SH+ Q K + RL SPYFGRVDFLEDG+ + +Y+G+ SF D FL Sbjct: 74 LLSEREQSHRHAYNQLKGLQRLQQSPYFGRVDFLEDGEKSEDAIYLGIHSFYDEQTEQFL 133 Query: 133 VYDWRTPIASLYYDYPPGTAAYETPGGRITGTMNLKRQYQIRDGHLQHMFDSSLTIGDEL 192 VYDWR PI+SLYYDY G A YE P I+G M LKRQY IR+G + MFD+ +TIGD+L Sbjct: 134 VYDWRAPISSLYYDYSVGRAKYEAPNDTISGEMTLKRQYVIRNGRIVSMFDTGVTIGDKL 193 Query: 193 LQQVLGGGANAQMKSIVATIQKEQNAIIRNDKSKMLIVQGAAGSGKTSAALQRVAYLLYK 252 LQ+VLG AN QMKSIV+TIQKEQN IIRN+KS++L+VQGAAGSGKTSAALQRVAYLLY+ Sbjct: 194 LQEVLGNNANTQMKSIVSTIQKEQNQIIRNEKSRLLVVQGAAGSGKTSAALQRVAYLLYR 253 Query: 253 HRDRLTADQIVLFSPNPMFNSYVSTVLPELGEENMQQTTFQEYLDYWLGSTFRLEDPFDQ 312 +R+ L ADQIVLFSPN MFNSYVSTVLPELGE+NM+QTTFQEYL+ + F LEDPF Q Sbjct: 254 YRETLHADQIVLFSPNSMFNSYVSTVLPELGEDNMKQTTFQEYLERHIDKKFELEDPFTQ 313 Query: 313 IEYVLTGQQGPEYKARMNGIQYKASEAYLQALRRYSVWLEREGMRFVSIRFRDRVLISDE 372 +EYVLT + YK R+ GI+YKAS +++ + +Y +L+REGM F I+FR VLIS E Sbjct: 314 MEYVLTRMEEKSYKTRLEGIRYKASSDFIEVVDQYVSYLKREGMLFKDIKFRGEVLISKE 373 Query: 373 QIKAKFYSYDASIRLANRITLVQKWLLQELARLEKVEQGADWVQEELNYLDGEQYAEVFS 432 QIK +FY +D SIR+ NRI L+ +WLL+EL EK+E+ WV+EE+ LD E YA+V Sbjct: 374 QIKEQFYKFDPSIRIPNRIKLISEWLLKELKEQEKIERKKLWVEEEVQLLDKETYAKVHQ 433 Query: 433 MLHKDRGVFDFAEKYARIDEIVRNKPRPDEGDFDFAEREEELLTRMIVKEQFQPLRRNVK 492 L K + D G FD ERE+ +L ++VK+ F+PLRR V+ Sbjct: 434 KLQKRQEYSD--------------------GTFDDFEREQNMLAAIVVKKYFKPLRRRVE 473 Query: 493 QFSFIDMLGLYSQLFSDEAAYREMTDEAEVPEHWPEICVHTKDKLSRNELLYEDATPYLY 552 + FI LY QLF D +++ +E E+P+ W EIC T +K+ + YEDATPYLY Sbjct: 474 KLQFIHTPALYMQLFKDPQFAKQLVEENELPQKWDEICGETIEKMQGFYMAYEDATPYLY 533 Query: 553 LKELVEGTRTNTQVRHIFIDEGQDYSMFQYEFLKRLFPRARMTVLGDFSQAIFTQATNLH 612 +K+ +E + NT V+HIFIDE QDYS FQY FLKR+FP +MT+LGDF+Q I+ A+ Sbjct: 534 MKDQLEELQKNTSVQHIFIDEAQDYSAFQYAFLKRIFPHTKMTILGDFNQTIYEHASE-- 591 Query: 613 GIGSPLVRLYGEEETSQFLLVRSYRSTREIVEFTKPLLPGGETIVPFERSGRKPTLTRLE 672 S L LYGEE + + +L RSYRST++I+EFTK L+ G E I PF+R G++P +T ++ Sbjct: 592 NEFSQLSTLYGEELSEKIVLTRSYRSTKQIIEFTKQLIDGDE-IEPFQREGKQPIITEVK 650 Query: 673 SSGRRVERIAADIAALQSEGYTSIAVITKTAAGSTEAYEALAAGGVKELRLITKNTPTFD 732 ++I I L+ G+ +IAVI KTA S EAY AL +RLI K T +FD Sbjct: 651 EGEAHHKKIVDQIEQLKQSGHRTIAVICKTAEESEEAYYALQTSL--PVRLIKKETSSFD 708 Query: 733 KGILVIPAYLAKGVEFDAVLIYDASLQSYHRENERKLFYTACTRAMHRLLLYTAEEWTPF 792 +GIL+IP+YL+KGVEFDAV+IYDAS + Y RE+ERKLFYTACTRAMH L +Y+ E F Sbjct: 709 EGILIIPSYLSKGVEFDAVIIYDASEEKYSRESERKLFYTACTRAMHELYIYSVGEMNEF 768 Query: 793 IQAVDTSLY 801 +Q+V Y Sbjct: 769 LQSVSPKTY 777 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,603,741,498 Number of extensions: 197605916 Number of successful extensions: 559874 Number of sequences better than 1.0e-05: 610 Number of HSP's gapped: 558070 Number of HSP's successfully gapped: 831 Length of query: 804 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 660 Effective length of database: 1,704,070,043 Effective search space: 1124686228380 Effective search space used: 1124686228380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)