BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0001.p (160 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9H6.1 B3K9H6_9BACI Transcription activator effector binding 161 2e-38 C2P5N0.1 C2P5N0_BACCE DNA-binding protein YobU 136 7e-31 A3I3Q9.1 A3I3Q9_9BACI Putative uncharacterized protein 135 1e-30 B7IMU6.1 B7IMU6_BACC2 Putative uncharacterized protein 135 1e-30 Q3EZE1.1 Q3EZE1_BACTI DNA-BINDING PROTEIN YOBU 135 1e-30 >B3K9H6.1 B3K9H6_9BACI Transcription activator effector binding Length = 169 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 106/150 (70%), Gaps = 2/150 (1%) Query: 11 LIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYESDANGA 70 + I GV VRTTN EAGP+G++P+LW+ YFQS L A + IYA+YTDYESDA+G+ Sbjct: 20 MSIQGVGVRTTNEAEAGPQGKIPQLWDRYFQSGL-QARLSDKDQAIYALYTDYESDASGS 78 Query: 71 YTVVIGHESSDKPVPDDKNHVVVA-VPGSKYRVFTTKKGPVYEVVAQAWREIWAYFGEST 129 YT++IG+ + + + + A VP S+Y VF T++GP+ E+V + W EIW+YF ++ Sbjct: 79 YTLIIGNRIDEDVAAETSSELQQASVPASRYLVFRTRRGPLMEIVPEVWHEIWSYFDQAA 138 Query: 130 EKRAYTGDFELYDARDFDPANTELQIYIAI 159 EKR YTGD+E YD + FDPANT + +YIA+ Sbjct: 139 EKRTYTGDYERYDMQRFDPANTVVNVYIAV 168 >C2P5N0.1 C2P5N0_BACCE DNA-binding protein YobU Length = 159 Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ GV+V TTN +EA EG++P+LW YFQ ++ + +A Y++YES Sbjct: 8 VKKEAFHAIGVSVTTTNEKEASTEGQIPQLWNQYFQEQMMHHIPNQQTKETFAFYSNYES 67 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT IG SS + VP+ N + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 68 DETGTYTFTIGTPVSSLEDVPE--NMTTLTIPATTYAVFTTRKGPVAEVVCEAWEYIWKW 125 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD R DP N +L IYIA+ Sbjct: 126 SKEN--KRAFTTDFELYDERALDPNNVQLDIYIAL 158 >A3I3Q9.1 A3I3Q9_9BACI Putative uncharacterized protein Length = 246 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 58/155 (37%), Positives = 98/155 (63%), Gaps = 2/155 (1%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 + ++ I G++ T+NA E + ++P+LW +++ N++ + +Y +Y+DYE+ Sbjct: 94 IKREEFQIIGISTETSNANEMTAQAKIPQLWHDFYEQNIVDQLSKLDNQSVYGLYSDYET 153 Query: 66 DANGAYTVVIGHESSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAYF 125 D NG Y++ +G E+S D V+ +P +KY VFT++KG + E+V Q W+EIWA+F Sbjct: 154 DVNGNYSITLGVEASLNTAHSDL--VIKTIPAAKYLVFTSQKGKMPEIVIQTWQEIWAWF 211 Query: 126 GESTEKRAYTGDFELYDARDFDPANTELQIYIAIR 160 S +R YTGDFELYD R +P ++++YIAI+ Sbjct: 212 ANSEVERTYTGDFELYDERCANPQEAQVEVYIAIK 246 >B7IMU6.1 B7IMU6_BACC2 Putative uncharacterized protein Length = 158 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ GV+V TTN +EA EG++P+LW YFQ ++ + A Y++YES Sbjct: 7 VKKEAFQAIGVSVTTTNEKEASTEGKIPELWNRYFQEQMMHHIPNQQTKETLAFYSNYES 66 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT IG SS K VP+ N + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 67 DETGTYTFTIGMPVSSLKEVPE--NMTTLTIPAATYAVFTTRKGPVAEVVCEAWEYIWKW 124 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD + DP N +L IYIA+ Sbjct: 125 SKEN--KRAFTTDFELYDEKATDPTNVQLDIYIAL 157 >Q3EZE1.1 Q3EZE1_BACTI DNA-BINDING PROTEIN YOBU Length = 158 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 71/155 (45%), Positives = 94/155 (60%), Gaps = 5/155 (3%) Query: 6 VHKQNLIITGVAVRTTNAEEAGPEGRLPKLWETYFQSNLLSAAGGENPHFIYAVYTDYES 65 V K+ GV+V TTN +EA EG++P+LW YFQ ++ + A Y++YES Sbjct: 7 VKKEAFQAIGVSVTTTNEKEASTEGKIPELWNRYFQEQMMHHIPNQQTKETLAFYSNYES 66 Query: 66 DANGAYTVVIGHE-SSDKPVPDDKNHVVVAVPGSKYRVFTTKKGPVYEVVAQAWREIWAY 124 D G YT IG SS K VP+ N + +P + Y VFTT+KGPV EVV +AW IW + Sbjct: 67 DETGTYTFTIGMPVSSLKEVPE--NMTTLTIPAATYAVFTTRKGPVAEVVCEAWEYIWKW 124 Query: 125 FGESTEKRAYTGDFELYDARDFDPANTELQIYIAI 159 E+ KRA+T DFELYD + DP N +L IYIA+ Sbjct: 125 SKEN--KRAFTTDFELYDEKATDPTNVQLDIYIAL 157 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,059,469,200 Number of extensions: 43301796 Number of successful extensions: 84139 Number of sequences better than 1.0e-05: 185 Number of HSP's gapped: 83906 Number of HSP's successfully gapped: 185 Length of query: 160 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 39 Effective length of database: 1,920,753,388 Effective search space: 74909382132 Effective search space used: 74909382132 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)