BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0030.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I2M1.1 B8I2M1_CLOCE ROK family protein 213 2e-53 Q5WIY7.1 Q5WIY7_BACSK Transcriptional regulator 161 8e-38 B1DLJ0.1 B1DLJ0_9BACL ROK family protein 156 3e-36 A0AFW2.1 A0AFW2_LISW6 Complete genome 156 3e-36 Q8Y9K7.1 Q8Y9K7_LISMO Lmo0520 protein 154 9e-36 >B8I2M1.1 B8I2M1_CLOCE ROK family protein Length = 332 Score = 213 bits (542), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 187/331 (56%), Gaps = 5/331 (1%) Query: 7 NALVIKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLAAGQISS 66 N +IK++N++ VRRV+KE K+ATK Q+A TGLS+VT S++E+L+ E+L S Sbjct: 5 NVNLIKQINLDKVRRVIKENKKATKPQLANLTGLSVVTINSLVELLLGNGEILVDELEVS 64 Query: 67 SGGRPARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVNR-PVEQVDLACF 125 SGGRPA Y +N+E+++AL+++ E VV L+G + EVN+ ++++ F Sbjct: 65 SGGRPATIYSFNEEYSMALVIYTNEYEMKDLTHIAVVNLYGEVI-EVNKIALDEISEYSF 123 Query: 126 EAIIDELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIEND 185 + ID++L +YP I+ IG G+PG E G++ SDY +L G EH R+++Q V+ END Sbjct: 124 DLTIDKMLKKYPNIKLIGIGMPGQEIRGKMENSDYISLEGKAFVEHLRKQFQIPVVFEND 183 Query: 186 VXXXXXXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGIS 245 V + + +Y P+++P G GI ING +++GK GFAGE +P Sbjct: 184 V-NAAVLGYCISNQCEDKNVIGIYIPEKYPLGVGIFINGNMYKGKDGFAGEAKFLPDEFD 242 Query: 246 WSGSEWQSSPAGLMEAIARLTATVSSVLNPDAVVLYGSFLQVDHLSGIMEQCAGLLPPGA 305 W+ + S + A+ +L T + +LNPD +V+Y L + I+E C +L Sbjct: 243 WNNPTFVSENISV--ALKKLILTFTCLLNPDILVIYRENLTRLSIDPIIEDCKKILKSEV 300 Query: 306 APQIVLSTDFAADYLDGMIVSTLATLETGLQ 336 P +V+S F D+ +G+ +L E Q Sbjct: 301 MPDVVVSNIFGEDFAEGIKQISLKPFEPKWQ 331 >Q5WIY7.1 Q5WIY7_BACSK Transcriptional regulator Length = 330 Score = 161 bits (408), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 165/324 (50%), Gaps = 7/324 (2%) Query: 10 VIKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLAAGQISSSGG 69 ++KE+N+ VRR ++ ATK ++AE TGLS+VT S+++ L++ E+ S+GG Sbjct: 8 LLKEINLGNVRRAMRTAGSATKPELAEATGLSVVTIASLVKELIQIGEIYEGKAAHSTGG 67 Query: 70 RPARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVNRPVEQVDLACFEAII 129 RP Y YN + +AL++ E + + + +V+ L G L + V D+ ++ Sbjct: 68 RPPVTYHYNYDICMALLVILHEHKEEVLV--SVINLNGDALKKQTHVVANFDVDAICILV 125 Query: 130 DELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIENDVXXX 189 DE + YPAI+ IG G+PG + G + +S +E L G + E ++R V END+ Sbjct: 126 DEYVAAYPAIKMIGMGIPGQQVDGEMKVSSHEKLIGARLTETIQQRCALPVWWENDINAA 185 Query: 190 XXXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGISWSGS 249 + L+FP+ PPG+ + I+GKL +GK+G AGE+ +P+ + W Sbjct: 186 LSGYCAKYPPNEGESVIGLFFPEHRPPGSAMYIDGKLFKGKNGMAGEIKFLPVDVDW--- 242 Query: 250 EWQS-SPAGLMEAIARLTATVSSVLNPDAVVLYGSFLQVDHLSGIMEQCAGLLPPGAAPQ 308 +Q E + +++VL PD +++Y + L + P +P+ Sbjct: 243 -YQPLESRRFTEFVCYTLQLLNAVLAPDKIIIYQHRCNKEELLAAWQAHEHDHPMPVSPK 301 Query: 309 IVLSTDFAADYLDGMIVSTLATLE 332 +++S F AD+L G+ L LE Sbjct: 302 VIVSDGFGADFLRGLKAMVLRGLE 325 >B1DLJ0.1 B1DLJ0_9BACL ROK family protein Length = 342 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/346 (28%), Positives = 167/346 (48%), Gaps = 13/346 (3%) Query: 1 MKNIGGNALVIKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLA 60 M + N + +K++N+ LV+ LK + ATK IA T LS+ T G++L NE+LA Sbjct: 1 MSSHTHNTIQVKKMNVELVKNALKAQGIATKASIAGLTKLSVATCGTIL------NELLA 54 Query: 61 AGQI------SSSGGRPARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVN 114 G+I ++GGRPA+QY YN + L E G I ++V L G + + Sbjct: 55 IGEIIELEPDGANGGRPAKQYRYNANFGCVICLLVRTEGGIHSISYSIVNLLGETISDTT 114 Query: 115 RPVEQVDLACFEAIIDELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRE 174 + +D + +I++L++ +QAIG G+PG G + + D L G PV + + Sbjct: 115 LTLPHIDRDVIDRLIEDLISDNENVQAIGIGIPGVVHRGVIGVCDVPDLAGQPVGPYLED 174 Query: 175 RYQKRVIIENDVXXXXXXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFA 234 +Y + IEND+ FP PGAG I++G++ G + F Sbjct: 175 KYGIPITIENDMNMTVYGFYHLQNFEEDKTFAVATFPKNHFPGAGFIVDGRILSGNTTFG 234 Query: 235 GEVANIPLGISWSGSEWQ-SSPAGLMEAIARLTATVSSVLNPDAVVLYGSFLQVDHLSGI 293 GEV+ +P G+S Q + G + ++ +++NP + + G + L + Sbjct: 235 GEVSFLPFGVSREEQLRQLHTEDGFIRLAVMTLTSIIAIINPVTIAITGELPRESQLKDL 294 Query: 294 MEQCAGLLPPGAAPQIVLSTDFAADYLDGMIVSTLATLETGLQLTK 339 E C +P PQ+++ + +Y+ G++ +TL +L LQ+T+ Sbjct: 295 HEGCLKDIPQEHMPQLIIQNNTQREYMTGLVTATLESLTYRLQVTE 340 >A0AFW2.1 A0AFW2_LISW6 Complete genome Length = 335 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/327 (29%), Positives = 161/327 (49%), Gaps = 6/327 (1%) Query: 11 IKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLAAGQISSSGGR 70 +KE+N ++ +L+++ TK +IA+ TGLS+VT ++ L E+L ++GGR Sbjct: 8 LKELNKKNIKSILRQQGAMTKAEIADVTGLSVVTVNKLIRDLTESEEILEQDNSVATGGR 67 Query: 71 PARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVNRPVEQVDLACFEAIID 130 A Y N + L L++ E+ I +V L G + + E +D+ + I Sbjct: 68 RAISYQINPNYQLVLVVSLQEKWKKITYSFSVFNLLGEPEFVEDMSGEDLDITALKRNIK 127 Query: 131 ELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIENDVXXXX 190 +L+ +P I I G+PG E GGRL D+ L + + E V++E D Sbjct: 128 DLVCAFPKISCIVMGVPGIEIGGRLRAMDFPLLLNVHLRETVEAEVNLPVLVETDTNAAI 187 Query: 191 XXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGISWSGSE 250 V LY+P+RFPPGAG+++NG++ +G++G AGE+ ++PL + W + Sbjct: 188 LGYKNRP--VEEENIVGLYYPERFPPGAGLLMNGEILKGRNGLAGEIKHMPLQVDWDNFD 245 Query: 251 WQSSPAGLMEAIARLTATVSSVLNPDAVVLYGSFL--QVDHLSGIMEQCAGLLPPGAAPQ 308 + S + I ++ S +P+ +VLY +F Q D+ + + + P P+ Sbjct: 246 F--SVDEIKAHIRKMVLLTMSFYDPETIVLYTNFYFGQKDYTEELTAELKQVYPYATLPK 303 Query: 309 IVLSTDFAADYLDGMIVSTLATLETGL 335 IVLS F DY G++ + LE L Sbjct: 304 IVLSRKFTTDYRIGLLAFGIDYLENNL 330 >Q8Y9K7.1 Q8Y9K7_LISMO Lmo0520 protein Length = 334 Score = 154 bits (390), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 6/327 (1%) Query: 11 IKEVNINLVRRVLKERKQATKRQIAEDTGLSIVTAGSVLEVLVRQNEVLAAGQISSSGGR 70 +KE+N ++ +L+++ TK +IAE TGLS+VT ++ LV E+L ++GGR Sbjct: 7 LKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGR 66 Query: 71 PARQYIYNDEHALALILFPFEERGGICIRCTVVTLFGRCLYEVNRPVEQVDLACFEAIID 130 A Y N L++ E+ I +V L G + + E +D+ + Sbjct: 67 RAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTK 126 Query: 131 ELLNRYPAIQAIGFGLPGAEAGGRLVLSDYEALRGIPVAEHFRERYQKRVIIENDVXXXX 190 +++ +P I + G+PG E GG+L D+ L + + E V++E D Sbjct: 127 DIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAI 186 Query: 191 XXXXXXXGRXXXXXXVYLYFPDRFPPGAGIIINGKLHRGKSGFAGEVANIPLGISWSGSE 250 + V LY+P+RFPPGAG+++NG++ +G++G AGE+ ++PL + W + Sbjct: 187 LGYKNRPMK--EENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFD 244 Query: 251 WQSSPAGLMEAIARLTATVSSVLNPDAVVLYGSFL--QVDHLSGIMEQCAGLLPPGAAPQ 308 + S + I ++ S +P+ +VLY +F Q D + + E+ + P P+ Sbjct: 245 F--SVDEIKAHIRKMALLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPE 302 Query: 309 IVLSTDFAADYLDGMIVSTLATLETGL 335 IVLS F DY G++ + LE + Sbjct: 303 IVLSRKFTTDYRIGLLAFGIDYLENNM 329 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,955,419,450 Number of extensions: 80838897 Number of successful extensions: 188704 Number of sequences better than 1.0e-05: 174 Number of HSP's gapped: 188445 Number of HSP's successfully gapped: 174 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)