BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0028.p (200 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KFF8.1 B3KFF8_9BACI Putative uncharacterized protein 254 3e-66 C1WR43.1 C1WR43_9ACTO Uncharacterized conserved protein 200 6e-50 C4RQD3.1 C4RQD3_9ACTO Putative uncharacterized protein 190 6e-47 A5CTM9.1 A5CTM9_CLAM3 Putative uncharacterized protein 190 7e-47 C1R250.1 C1R250_9ACTO Uncharacterized conserved protein 182 1e-44 >B3KFF8.1 B3KFF8_9BACI Putative uncharacterized protein Length = 204 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 112/197 (56%), Positives = 144/197 (73%) Query: 2 RKTVNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEA 61 R ++W GVW N P S+ + DG + +G D+W++T+YGF+ ++G ALLA W+ + Sbjct: 6 RTLMDWNEGVWLNAPQSSTIEDGMLKIVPEKGRDFWKKTLYGFEFEDGPALLAKWDRNTG 65 Query: 62 VEVSFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPE 121 VEVSF L F ELYDQAG++L+H +WIKAGIE+NDG P + VVTDGYSDWSL+ VPE Sbjct: 66 VEVSFRLNSFVELYDQAGLLLYHGQEQWIKAGIEMNDGTPQLAVVVTDGYSDWSLTAVPE 125 Query: 122 WTGGVVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTF 181 W G VT+RAS + DA VIRAR+ H WRTIRVARFPY + +AGPF C+P R G + TF Sbjct: 126 WEGEEVTLRASIIKDAAVIRARSGKHAWRTIRVARFPYPSNNQAGPFACSPQREGFEATF 185 Query: 182 TRWAYTAPDKDIHVDPP 198 TRW TAPD+D+H+DPP Sbjct: 186 TRWEVTAPDEDLHIDPP 202 >C1WR43.1 C1WR43_9ACTO Uncharacterized conserved protein Length = 197 Score = 200 bits (509), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 94/195 (48%), Positives = 125/195 (64%), Gaps = 1/195 (0%) Query: 2 RKTVNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEA 61 R+ + W W N+P + +V A GSD+W T YGF HD+GHALL + A Sbjct: 4 RRAIEWSEAAWLNQPEAVLADGNNLLVTARGGSDFWRTTSYGFVHDDGHALLTDFPTEAA 63 Query: 62 VEVSFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPE 121 +EV F + F +LYDQAG+++ WIKAG+E DGVPH+GAVVT G SDWS++PVP+ Sbjct: 64 IEVGF-VAAFEQLYDQAGLLIRVDEQTWIKAGVEYTDGVPHLGAVVTHGRSDWSMAPVPD 122 Query: 122 WTGGVVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTF 181 W G VT+RASR DAV +RAR ++ PWR +R+A + AGP CAPTR+GL V F Sbjct: 123 WAGRDVTLRASRSGDAVTLRARCEDEPWRLLRLAPLAPDAEAAAGPMCCAPTRSGLTVRF 182 Query: 182 TRWAYTAPDKDIHVD 196 T +A T PD +H++ Sbjct: 183 TSFAVTTPDPSLHLN 197 >C4RQD3.1 C4RQD3_9ACTO Putative uncharacterized protein Length = 204 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 93/193 (48%), Positives = 121/193 (62%), Gaps = 2/193 (1%) Query: 3 KTVNWQSGVWSNEPVSAK-VLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEA 61 + V+W G W + PV A+ DG +VE GSD+W T YGF HD+G ALLA A Sbjct: 10 RDVDWAQGDWLHRPVRAEPTPDGGLVVEPGSGSDFWRHTSYGFVHDDGPALLAPLPGGSA 69 Query: 62 VEVSFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPE 121 VEV F FTE +DQAG+++ W+KAG+E++DG P +GAVVT +SDWS++PVP+ Sbjct: 70 VEVDFRFD-FTEQFDQAGVLVRVDERNWVKAGVEISDGEPQVGAVVTREFSDWSVAPVPQ 128 Query: 122 WTGGVVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTF 181 W+G VT+R SR DA+ +RARA PWR +RVA + AGPF C+PTR GL V F Sbjct: 129 WSGRTVTVRVSRAGDALTVRARAGGEPWRLVRVAPLAPDAEASAGPFCCSPTRGGLAVVF 188 Query: 182 TRWAYTAPDKDIH 194 T W D +H Sbjct: 189 TGWRQGPADAALH 201 >A5CTM9.1 A5CTM9_CLAM3 Putative uncharacterized protein Length = 195 Score = 190 bits (482), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 97/192 (50%), Positives = 119/192 (61%), Gaps = 1/192 (0%) Query: 5 VNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEV 64 ++W SG W+N P V D V A EGSD W T YGF HD HALL ++ A+EV Sbjct: 4 IDWNSGSWTNAPAHVAVADDGMRVTAVEGSDAWRITSYGFVHDTEHALLVPFDQGAAMEV 63 Query: 65 SFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTG 124 SF L + +DQAGI + + WIKAG+E +DG +GAVVT G SDWSL+PVP+W G Sbjct: 64 SFRLD-LSAQFDQAGIFVRVDESTWIKAGVERSDGEDGLGAVVTRGMSDWSLAPVPDWRG 122 Query: 125 GVVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFTRW 184 +VTIRASR DA++IRAR D+ PWR +RVA + AGP CAPTR GL V FT W Sbjct: 123 RLVTIRASRSGDALMIRARVDDEPWRLVRVAPLDPDAAVTAGPMCCAPTREGLTVHFTAW 182 Query: 185 AYTAPDKDIHVD 196 D +H D Sbjct: 183 LIGTADAGLHPD 194 >C1R250.1 C1R250_9ACTO Uncharacterized conserved protein Length = 197 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 117/190 (61%), Gaps = 1/190 (0%) Query: 5 VNWQSGVWSNEPVSAKVLDGAFIVEAAEGSDYWEQTMYGFQHDNGHALLASWEDSEAVEV 64 V W +G W N P + + G +V AA SD+W T YGF HD+GHALL + AVEV Sbjct: 9 VPWSAGSWLNPPPAVREEGGDLVVTAAAESDFWRTTSYGFVHDDGHALLTDFPAGSAVEV 68 Query: 65 SFSLQGFTELYDQAGIMLWHSSTEWIKAGIELNDGVPHIGAVVTDGYSDWSLSPVPEWTG 124 SF TE +DQAG+++ W K+G+E DG P +GAVVT G SDWS +PVPEW Sbjct: 69 SFRC-ALTEQFDQAGVLVRVDEQTWTKSGVEFADGAPQLGAVVTRGMSDWSTAPVPEWAD 127 Query: 125 GVVTIRASRLNDAVVIRARADNHPWRTIRVARFPYETGKKAGPFVCAPTRAGLQVTFTRW 184 VTIR SR DA+ +RAR ++ PWR +R+A + +AGP CAPTRAGL V FT++ Sbjct: 128 REVTIRVSRAGDALTVRARCEDGPWRLVRLAPLDPDAVAQAGPACCAPTRAGLDVRFTKF 187 Query: 185 AYTAPDKDIH 194 D+ +H Sbjct: 188 TIGPADESLH 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,369,130,168 Number of extensions: 54920060 Number of successful extensions: 177661 Number of sequences better than 1.0e-05: 196 Number of HSP's gapped: 177284 Number of HSP's successfully gapped: 196 Length of query: 200 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 71 Effective length of database: 1,845,385,268 Effective search space: 131022354028 Effective search space used: 131022354028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)