BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0026.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9M070.1 B9M070_GEOSF Dinitrogenase iron-molybdenum cofactor bio...    75   3e-12
B9E4V0.1 B9E4V0_CLOK1 Putative uncharacterized protein                 68   3e-10
B5YH14.1 B5YH14_THEYD Nitrogen fixation protein NifX                   67   7e-10
A6LR34.1 A6LR34_CLOB8 Dinitrogenase iron-molybdenum cofactor bio...    66   9e-10
A5N0Z9.1 A5N0Z9_CLOK5 NifB-related protein                             66   9e-10

>B9M070.1 B9M070_GEOSF Dinitrogenase iron-molybdenum cofactor biosynthesis
           protein
          Length = 139

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 54/99 (54%)

Query: 6   RIAVGSADGYAINEHFGRCGRFLIYEIEQDGTYSQIENRSCEWRRGQDGHDVNHLQTAAT 65
           R+A+ S+DG +INEHFG+  +F+IYE+E DG Y Q+E R            V+       
Sbjct: 3   RVAIASSDGESINEHFGKASQFIIYEVEDDGNYRQVEKREVLSGCSNAETSVHGPGGTTD 62

Query: 66  VLADCAFVLVGQIGPGARAVLYDNGIQAMAVQSPIELAL 104
            L D   V   QIGPGA A L + G++A  ++  +  AL
Sbjct: 63  RLGDVQAVFAVQIGPGAAAALQEKGVRAFNLKGSVHKAL 101


>B9E4V0.1 B9E4V0_CLOK1 Putative uncharacterized protein
          Length = 127

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 12/111 (10%)

Query: 3   VSWRIAVGSADGYAINEHFGRCGRFLIYEIEQDGTYSQIENRS------CEWRRGQDGHD 56
           V++++AV S+DG  +NEHF +  +F IY++E DG Y  +E R       CE    ++GH 
Sbjct: 8   VNYKVAVASSDGKFVNEHFRKASQFYIYKVE-DGNYEFMELRKVDDIFCCE----KEGH- 61

Query: 57  VNHLQTAATVLADCAFVLVGQIGPGARAVLYDNGIQAMAVQSPIELALARL 107
            + + +    L+ C  VLV QIG  A   L  NGI+A  +   I+ AL +L
Sbjct: 62  YDKILSIVKHLSGCRIVLVSQIGREAAVFLNRNGIEAFDINQSIDEALEKL 112


>B5YH14.1 B5YH14_THEYD Nitrogen fixation protein NifX
          Length = 133

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 63/113 (55%), Gaps = 13/113 (11%)

Query: 6   RIAVGSADGYAINEHFGRCGRFLIYEIEQDG-------TYSQIENRSCEWRRGQDGHDVN 58
           ++A  S DG  +NEHFGR G+F++YE+E++G        +S+  +R+ E    +D  +V+
Sbjct: 2   KVAFASTDGIRVNEHFGRSGQFVVYEVEEEGYKFMEIRKFSEGRDRAIE--ESKDTPEVH 59

Query: 59  H--LQTAATVLADCAFVLVGQIGPGARAVLYDNGIQAMAVQ--SPIELALARL 107
           +  +      L+DC  + + +IGP + A L   GI  + V+  S IE  L +L
Sbjct: 60  NDLVWDKVKALSDCKIIYMTEIGPPSAARLSQKGIMPLKVKEGSSIEECLEKL 112


>A6LR34.1 A6LR34_CLOB8 Dinitrogenase iron-molybdenum cofactor biosynthesis
           protein
          Length = 115

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 3   VSWRIAVGSADGYAINEHFGRCGRFLIYEIEQDGTYSQIENRSCEWRRGQDGHDVNHLQT 62
           +S++IA  S+DG  +N+HFGR  +FLI E++ D  Y  +E R  E    +  H  + L  
Sbjct: 1   MSYKIAFASSDGKVVNQHFGRTKQFLIVEVD-DKEYKYVETRFNEPSCQEFQHTEDALSK 59

Query: 63  AATVLADCAFVLVGQIGPGARAVLYDNGIQAMAVQSPIELALARL 107
           +  +++DC  V V +IG GA A +   GI+ +     IE  L ++
Sbjct: 60  SIELISDCKAVFVARIGQGALAEVEAKGIKGIEAPYFIEDILKKV 104


>A5N0Z9.1 A5N0Z9_CLOK5 NifB-related protein
          Length = 120

 Score = 66.2 bits (160), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 12/111 (10%)

Query: 3   VSWRIAVGSADGYAINEHFGRCGRFLIYEIEQDGTYSQIENRS------CEWRRGQDGHD 56
           +++++AV S+DG  +NEHF +  +F IY++E DG Y  +E R       CE    ++GH 
Sbjct: 1   MNYKVAVASSDGKFVNEHFRKASQFYIYKVE-DGNYEFMELRKVDDIFCCE----KEGH- 54

Query: 57  VNHLQTAATVLADCAFVLVGQIGPGARAVLYDNGIQAMAVQSPIELALARL 107
            + + +    L+ C  VLV QIG  A   L  NGI+A  +   I+ AL +L
Sbjct: 55  YDKILSIVKHLSGCRIVLVSQIGREAAVFLNRNGIEAFDINQSIDEALEKL 105


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 696,539,341
Number of extensions: 24933714
Number of successful extensions: 61328
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 61450
Number of HSP's successfully gapped: 17
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)