BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0017.p (211 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LR28.1 A6LR28_CLOB8 Nitrogenase EC=1.18.6.1 274 4e-72 B9DZW8.1 B9DZW8_CLOK1 Putative uncharacterized protein 224 5e-57 A5N6E8.1 A5N6E8_CLOK5 NifK1 EC=1.18.6.1 223 6e-57 A3DFR3.1 A3DFR3_CLOTH Nitrogenase EC=1.18.6.1 220 6e-56 B4BA93.1 B4BA93_CLOTM Nitrogenase EC=1.18.6.1 220 6e-56 >A6LR28.1 A6LR28_CLOB8 Nitrogenase EC=1.18.6.1 Length = 442 Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 129/185 (69%), Positives = 159/185 (85%), Gaps = 1/185 (0%) Query: 2 QQSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGGSTIPCTNSSEAEIVFGGEGKLRS 61 QQ+VIAI+R VP++H+GPGCS KI +GQGEGYAGG+TIPCTN++EA++VFGGE KL++ Sbjct: 17 QQTVIAIKRGVPILHSGPGCSNKISSLIGQGEGYAGGNTIPCTNATEADVVFGGERKLKN 76 Query: 62 VIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNYVSHD 121 VIDGAF+VIDADLYVVLTGCTSDIVGDDVG VT +Q+ +P+VYVETGGFKSNNYVSH Sbjct: 77 VIDGAFQVIDADLYVVLTGCTSDIVGDDVGSVTSKYQEGDKPIVYVETGGFKSNNYVSHS 136 Query: 122 LVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLKPNVL 181 V+ AI+ QYVDK+ + + + GLVNVF +VPYQDPYW GNL+E+KR+L GIGL+ N+L Sbjct: 137 EVVNAIIDQYVDKFK-NSNGVKKGLVNVFTTVPYQDPYWNGNLEEIKRVLEGIGLEVNIL 195 Query: 182 FGPES 186 FG ES Sbjct: 196 FGNES 200 >B9DZW8.1 B9DZW8_CLOK1 Putative uncharacterized protein Length = 443 Score = 224 bits (570), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 8/190 (4%) Query: 2 QQSVIAIQRAVPVVHAGPGCSTKIHGFLG-----QGEGYAGGSTIPCTNSSEAEIVFGGE 56 QQSV+AI+ A+P++H+GPGC K+ L QG GY+GGS++PCTN++E E+VFGGE Sbjct: 18 QQSVLAIKGAIPILHSGPGCGIKLFDGLSVDSGYQGVGYSGGSSVPCTNTTEREVVFGGE 77 Query: 57 GKLRSVIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNN 116 +L+ VIDG KV+ DL+VVLTGCTSDI+GDDVGQV +++D G P+VY ET GFK +N Sbjct: 78 QRLKQVIDGTLKVLKGDLFVVLTGCTSDIIGDDVGQVVSEYKDKGIPIVYAETAGFKGSN 137 Query: 117 YVSHDLVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGL 176 + H+LVI+AI+ Q+V + V K+ GLVNV++ +PYQD +W GNL E+K++L GIGL Sbjct: 138 FKGHELVIEAIINQFVGEKPVKKEM---GLVNVWSVLPYQDTFWCGNLSEVKKLLEGIGL 194 Query: 177 KPNVLFGPES 186 K N+LFG ES Sbjct: 195 KVNILFGTES 204 >A5N6E8.1 A5N6E8_CLOK5 NifK1 EC=1.18.6.1 Length = 442 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 107/190 (56%), Positives = 145/190 (76%), Gaps = 8/190 (4%) Query: 2 QQSVIAIQRAVPVVHAGPGCSTKIHGFLG-----QGEGYAGGSTIPCTNSSEAEIVFGGE 56 QQSV+AI+ A+P++H+GPGC K+ L QG GY+GGS++PCTN++E E+VFGGE Sbjct: 17 QQSVLAIKGAIPILHSGPGCGIKLFDGLSVDSGYQGVGYSGGSSVPCTNTTEREVVFGGE 76 Query: 57 GKLRSVIDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNN 116 +L+ VIDG KV+ DL+VVLTGCTSDI+GDDVGQV +++D G P+VY ET GFK +N Sbjct: 77 QRLKQVIDGTLKVLKGDLFVVLTGCTSDIIGDDVGQVVSEYKDKGIPIVYAETAGFKGSN 136 Query: 117 YVSHDLVIQAIVKQYVDKYAVDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGL 176 + H+LVI+AI+ Q+V + V K+ GLVNV++ +PYQD +W GNL E+K++L GIGL Sbjct: 137 FKGHELVIEAIINQFVGEKPVKKEM---GLVNVWSVLPYQDTFWCGNLSEVKKLLEGIGL 193 Query: 177 KPNVLFGPES 186 K N+LFG ES Sbjct: 194 KVNILFGTES 203 >A3DFR3.1 A3DFR3_CLOTH Nitrogenase EC=1.18.6.1 Length = 447 Score = 220 bits (561), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 135/185 (72%), Gaps = 1/185 (0%) Query: 3 QSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGGSTIPCTNSSEAEIVFGGEGKLRSV 62 Q+V+AI RAVP++H+GPGC I GF + GYAGGST PCTN +E E+VFGG +LR + Sbjct: 20 QTVVAIPRAVPILHSGPGCGEMIAGFFERSTGYAGGSTSPCTNFTEKEVVFGGINRLRDI 79 Query: 63 IDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNYVSHDL 122 I+ +KV+D DL VVLTGCT+ IVGDDV + +F G+P+V VET GFK+ N+ +H L Sbjct: 80 IENTYKVLDTDLQVVLTGCTAGIVGDDVDSLVSEFAQKGKPIVSVETAGFKATNFEAHSL 139 Query: 123 VIQAIVKQYVDKYA-VDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLKPNVL 181 V+ AI+ QYV ++ +K + VN+ AS+PYQDP+W GNL E KR+L GIGLK NVL Sbjct: 140 VVNAIIDQYVSRFEDENKPKSQKNTVNLIASIPYQDPFWKGNLAEYKRLLAGIGLKANVL 199 Query: 182 FGPES 186 FGP+S Sbjct: 200 FGPQS 204 >B4BA93.1 B4BA93_CLOTM Nitrogenase EC=1.18.6.1 Length = 447 Score = 220 bits (561), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 135/185 (72%), Gaps = 1/185 (0%) Query: 3 QSVIAIQRAVPVVHAGPGCSTKIHGFLGQGEGYAGGSTIPCTNSSEAEIVFGGEGKLRSV 62 Q+V+AI RAVP++H+GPGC I GF + GYAGGST PCTN +E E+VFGG +LR + Sbjct: 20 QTVVAIPRAVPILHSGPGCGEMIAGFFERSTGYAGGSTSPCTNFTEKEVVFGGINRLRDI 79 Query: 63 IDGAFKVIDADLYVVLTGCTSDIVGDDVGQVTRDFQDLGQPVVYVETGGFKSNNYVSHDL 122 I+ +KV+D DL VVLTGCT+ IVGDDV + +F G+P+V VET GFK+ N+ +H L Sbjct: 80 IENTYKVLDTDLQVVLTGCTAGIVGDDVDSLVSEFAQKGKPIVSVETAGFKATNFEAHSL 139 Query: 123 VIQAIVKQYVDKYA-VDKDQMIPGLVNVFASVPYQDPYWIGNLQELKRILTGIGLKPNVL 181 V+ AI+ QYV ++ +K + VN+ AS+PYQDP+W GNL E KR+L GIGLK NVL Sbjct: 140 VVNAIIDQYVSRFEDENKPKSQKNTVNLIASIPYQDPFWKGNLAEYKRLLAGIGLKANVL 199 Query: 182 FGPES 186 FGP+S Sbjct: 200 FGPQS 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,378,360,938 Number of extensions: 60690693 Number of successful extensions: 121883 Number of sequences better than 1.0e-05: 214 Number of HSP's gapped: 122019 Number of HSP's successfully gapped: 214 Length of query: 211 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 81 Effective length of database: 1,835,964,253 Effective search space: 148713104493 Effective search space used: 148713104493 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)