BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0011.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BIK4.1 C3BIK4_9BACI ABC transporter 257 4e-67 C3B1T8.1 C3B1T8_BACMY ABC transporter 256 1e-66 C3AJY5.1 C3AJY5_BACMY ABC transporter 256 1e-66 C2W6D2.1 C2W6D2_BACCE ABC transporter 254 3e-66 C0ZJW6.1 C0ZJW6_BREBN Probable ABC transporter ATP-binding protein 243 1e-62 >C3BIK4.1 C3BIK4_9BACI ABC transporter Length = 327 Score = 257 bits (657), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 123/181 (67%), Positives = 145/181 (80%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 MIQ ++ K YE K ++G FR + R V AV L L+I KGEIVGLLG+NGAGKTTTI+ML Sbjct: 1 MIQAKQLVKRYELKEKVGFFRKKRRVVEAVNGLDLTIQKGEIVGLLGVNGAGKTTTIKML 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 +TLL+PTSG+IEIDG+ V++K+NMIAGGERMLYWRLTG+ENLQYFG LYGL Sbjct: 61 ATLLEPTSGAIEIDGIDSTKQDLLVKKKINMIAGGERMLYWRLTGKENLQYFGSLYGLKG 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDAP 180 AE+ LL +V L EAA+ PVE+YSKGMKQRLQIARGLINDP+YLFLDEPTLGLDAP Sbjct: 121 AELEERIQFLLGQVELKEAANTPVERYSKGMKQRLQIARGLINDPDYLFLDEPTLGLDAP 180 Query: 181 I 181 + Sbjct: 181 V 181 >C3B1T8.1 C3B1T8_BACMY ABC transporter Length = 327 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 144/181 (79%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 MIQ ++ K YE K ++G FR + R V AV L L+I KGEIVGLLG+NGAGKTTTI+ML Sbjct: 1 MIQAKQLVKRYELKEKVGFFRKKRRVVEAVNGLDLTIQKGEIVGLLGVNGAGKTTTIKML 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 +TLL+PTSG+IEIDG+ V++K+NMIAGGERMLYWRLTG+ENLQYFG LYGL Sbjct: 61 ATLLEPTSGAIEIDGIDSTKQDLLVKKKINMIAGGERMLYWRLTGKENLQYFGSLYGLKG 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDAP 180 AE+ LL +V L E A+ PVE+YSKGMKQRLQIARGLINDP+YLFLDEPTLGLDAP Sbjct: 121 AELEERIQFLLGQVELKEVANTPVERYSKGMKQRLQIARGLINDPDYLFLDEPTLGLDAP 180 Query: 181 I 181 + Sbjct: 181 V 181 >C3AJY5.1 C3AJY5_BACMY ABC transporter Length = 327 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 144/181 (79%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 MIQ ++ K YE K ++G FR + R V AV L L+I KGEIVGLLG+NGAGKTTTI+ML Sbjct: 1 MIQAKQLVKRYELKEKVGFFRKKRRVVEAVNGLDLTIQKGEIVGLLGVNGAGKTTTIKML 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 +TLL+PTSG+IEIDG+ V++K+NMIAGGERMLYWRLTG+ENLQYFG LYGL Sbjct: 61 ATLLEPTSGAIEIDGIDSTKQDLLVKKKINMIAGGERMLYWRLTGKENLQYFGSLYGLKG 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDAP 180 AE+ LL +V L E A+ PVE+YSKGMKQRLQIARGLINDP+YLFLDEPTLGLDAP Sbjct: 121 AELEERIQFLLGQVELKEVANTPVERYSKGMKQRLQIARGLINDPDYLFLDEPTLGLDAP 180 Query: 181 I 181 + Sbjct: 181 V 181 >C2W6D2.1 C2W6D2_BACCE ABC transporter Length = 327 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 122/181 (67%), Positives = 142/181 (78%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 MIQ ++ K YE K ++G FR + R V AV L L+I KGEIVGLLG+NGAGKTTTI+ML Sbjct: 1 MIQAKQLVKRYELKEKVGFFRKKKRVVEAVNGLDLTIQKGEIVGLLGVNGAGKTTTIKML 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 +TLL+PTSG+IEIDGM +++K+NMIAGGERMLYWRLTG ENLQYFG LYGL Sbjct: 61 ATLLEPTSGTIEIDGMDSMKQDLLIKKKINMIAGGERMLYWRLTGYENLQYFGSLYGLKG 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDAP 180 E+ LL +V L EAA PVE+YSKGMKQRLQIARGLINDP+YLFLDEPTLGLDAP Sbjct: 121 IELEERIQFLLQQVELKEAAHTPVERYSKGMKQRLQIARGLINDPDYLFLDEPTLGLDAP 180 Query: 181 I 181 + Sbjct: 181 V 181 >C0ZJW6.1 C0ZJW6_BREBN Probable ABC transporter ATP-binding protein Length = 328 Score = 243 bits (619), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 118/181 (65%), Positives = 138/181 (76%) Query: 1 MIQMNEVTKIYETKNRLGLFRAETRTVTAVQSLTLSIAKGEIVGLLGLNGAGKTTTIRML 60 M+ + K+Y K + G FR + V AV L+ + G+I+GLLG+NGAGKTTTI+M Sbjct: 1 MLIAENLRKVYRVKEKKGWFRQQWTEVEAVADLSFRMVPGKIIGLLGINGAGKTTTIKMC 60 Query: 61 STLLDPTSGSIEIDGMPMADNRRTVQQKVNMIAGGERMLYWRLTGRENLQYFGRLYGLNA 120 STLL PTSG+I +DG + R V+ KVNMIAGGERMLYWRLTGRENLQYFG LYGL Sbjct: 61 STLLTPTSGTITVDGYDAVKDDRFVKAKVNMIAGGERMLYWRLTGRENLQYFGSLYGLQG 120 Query: 121 AEIRSLSDLLLAEVGLTEAADQPVEQYSKGMKQRLQIARGLINDPEYLFLDEPTLGLDAP 180 E+R+ D LL +VGL EAA+ PVE+YSKGMKQRLQIARGLINDP YLFLDEPTLGLDAP Sbjct: 121 HELRNRIDSLLLQVGLYEAANTPVERYSKGMKQRLQIARGLINDPRYLFLDEPTLGLDAP 180 Query: 181 I 181 I Sbjct: 181 I 181 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,044,256,532 Number of extensions: 39736360 Number of successful extensions: 392283 Number of sequences better than 1.0e-05: 73677 Number of HSP's gapped: 328783 Number of HSP's successfully gapped: 76631 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)