BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0010.p (267 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8G2I8.1 B8G2I8_DESHD ABC-2 type transporter 197 8e-49 C0ZJW7.1 C0ZJW7_BREBN Probable ABC transporter permease protein 193 1e-47 Q24VL3.1 Q24VL3_DESHY Putative uncharacterized protein 186 3e-45 C3BIK3.1 C3BIK3_9BACI ABC-2 domain containing protein 173 2e-41 C3B1T7.1 C3B1T7_BACMY ABC-2 domain containing protein 161 7e-38 >B8G2I8.1 B8G2I8_DESHD ABC-2 type transporter Length = 269 Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 113/266 (42%), Positives = 159/266 (59%), Gaps = 2/266 (0%) Query: 1 VWQTVFATAARNQRANLRAFPWAFTLGHMIEGGXXXXXXXXXXXXXIQGDLDNRFALYAG 60 +WQT AT RN RA+PW+F +G+++ G ++ RFA +AG Sbjct: 1 MWQTFRATFRRNYLTMRRAYPWSFFIGNILSAVYTVLFAYLTYNYVFLGQMETRFADFAG 60 Query: 61 SGNYLAYAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQF 120 +G+Y++Y ++GG + ++SM+M VSRALITE REG+LEALLL+PSSR GYFLGT LQ Sbjct: 61 TGDYISYVVLGGTVYSLAVSMLMIVSRALITELREGSLEALLLTPSSRKGYFLGTGLQGL 120 Query: 121 YRSGMVLLAVLVFGILAGMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYTRDTYIV 180 R G+ +++ G G+ L+ L+A I + I S +A ALVLGSIMLY RDTYI Sbjct: 121 MRVGIEFSVIILIGWFLGLNLTHINGLTAFIVLSITIGSFFAQALVLGSIMLYFRDTYIT 180 Query: 181 QNTLFAVTTLLCGFQFPRQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAI-PLRDTLPA 239 QNTLF V L+ G FP QYLPG+LQ + P G + R+ L + Sbjct: 181 QNTLFIVMALVSGVTFPVQYLPGWLQPLSMMMPLNYGLQAFRSSVIEGSGLWASRNELTS 240 Query: 240 LL-LSLVYIAVGMWSNRLVERGLFEK 264 L+ LSL+Y +G+W+ ++ E+ + EK Sbjct: 241 LIVLSLIYFGIGIWAVQVTEKRVVEK 266 >C0ZJW7.1 C0ZJW7_BREBN Probable ABC transporter permease protein Length = 295 Score = 193 bits (491), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 113/268 (42%), Positives = 150/268 (55%), Gaps = 6/268 (2%) Query: 1 VWQTVFATAARNQRANLRAFPWAFTLGHMIEGGXXXXXXXXXXXXXIQGDLDNRFALYAG 60 V+ AT RN R +RA+PW+F +GH+ G G LD FA AG Sbjct: 27 VFHVAKATFIRNTRVMIRAYPWSFVIGHIFSGVYTVLFAFFAYHYVFAGQLDENFAHLAG 86 Query: 61 SGNYLAYAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQF 120 S +YL+YAI+GGA F++S +MNVSR+LITE REGTLEA+LL+PS R GYFLG QQ Sbjct: 87 SSDYLSYAILGGAFYAFAVSTLMNVSRSLITELREGTLEAVLLTPSLRRGYFLGNVAQQL 146 Query: 121 YRSGMVLLAVLVFGILAGMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYTRDTYIV 180 R+ +++ G L G+ LS + SA + +L + + ALVLGS+ML+ RDTYI Sbjct: 147 MRTLFEFSVIVLVGALFGLTLSQTNVWSAVLVWILSTGAFFCQALVLGSLMLWFRDTYIT 206 Query: 181 QNTLFAVTTLLCGFQFPRQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAIPLRDTLPAL 240 QNTLFAV + G FP YLP ++Q G + P G PL P L Sbjct: 207 QNTLFAVMAFVSGVTFPIPYLPEWVQPLGLIMPLAPALDAFRQCVIQGA--PLHAVSPQL 264 Query: 241 L----LSLVYIAVGMWSNRLVERGLFEK 264 LSLVY+ +G+W R +E+ + E Sbjct: 265 FHMTALSLVYLVMGVWGIRRMEKRVMES 292 >Q24VL3.1 Q24VL3_DESHY Putative uncharacterized protein Length = 254 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/249 (42%), Positives = 151/249 (60%), Gaps = 2/249 (0%) Query: 18 RAFPWAFTLGHMIEGGXXXXXXXXXXXXXIQGDLDNRFALYAGSGNYLAYAIIGGALNVF 77 RA+PW+F +G+++ G ++ RFA +AG+G+Y++Y ++GG + Sbjct: 3 RAYPWSFFIGNILSAVYTVLFAYLTYNYVFLGQMETRFADFAGTGDYISYVVLGGTVYSL 62 Query: 78 SISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQFYRSGMVLLAVLVFGILA 137 ++SM+M VSRALITE REG+LEALLL+PSSR GYFLGT LQ R G+ +++ G Sbjct: 63 AVSMLMIVSRALITELREGSLEALLLTPSSRKGYFLGTGLQGLMRVGIEFSFIILIGWFL 122 Query: 138 GMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYTRDTYIVQNTLFAVTTLLCGFQFP 197 G+ L+ L+A I + I S +A ALVLGSIMLY RDTYI QNTLF V L+ G FP Sbjct: 123 GLNLTHINGLTAFIVLSITIGSFFAQALVLGSIMLYFRDTYITQNTLFIVMALVSGVTFP 182 Query: 198 RQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAI-PLRDTLPALL-LSLVYIAVGMWSNR 255 QYLPG+LQ + P G + R+ L +L+ LSL+Y +G+W+ + Sbjct: 183 VQYLPGWLQPLSMMMPLNYGLQAFRSSVIEGSGLWASRNELTSLIVLSLIYFGIGIWAIQ 242 Query: 256 LVERGLFEK 264 + E+ + EK Sbjct: 243 VTEKRVVEK 251 >C3BIK3.1 C3BIK3_9BACI ABC-2 domain containing protein Length = 264 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/263 (38%), Positives = 143/263 (54%), Gaps = 2/263 (0%) Query: 7 ATAARNQRANLRAFPWAFTLGHMIEGGXXXXXXXXXXXXXIQGDLDNRFALYAGSGNYLA 66 AT R+ RA+PW+F LGH++ G QG LD FA + +YL+ Sbjct: 2 ATFRRDFYTMRRAYPWSFFLGHILTGVYIVLFAYLTYHFMFQGKLDANFAKLGKTDDYLS 61 Query: 67 YAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQFYRSGMV 126 Y I+G FS+S++M VSR LITE REGTL+ LLL+PSSR GYFLG A Q R G+ Sbjct: 62 YVILGAVFYSFSVSLLMIVSRTLITELREGTLDVLLLTPSSRQGYFLGAAAQGILRVGLE 121 Query: 127 LLAVLVFGILAGMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYTRDTYIVQNTLFA 186 + + +FG+ G++ ++ ++F + +A ALVLG+ MLY RDTY+ QNTLF Sbjct: 122 FITIFIFGLFFGLQFREINMIPVVFLLIIFFFAIFAQALVLGAFMLYFRDTYLTQNTLFI 181 Query: 187 VTTLLCGFQFPRQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAI-PLRDTLPALL-LSL 244 +L+ G FP YLP FLQ + P G + ++ L LL L + Sbjct: 182 FMSLVSGVFFPVGYLPTFLQPMSVLMPLSHGLSAFRLCMIEGGNLASIQIELMWLLGLGV 241 Query: 245 VYIAVGMWSNRLVERGLFEKHQA 267 Y G+++ + +E+ + EKH A Sbjct: 242 AYFIAGVYAMKRMEKYVIEKHFA 264 >C3B1T7.1 C3B1T7_BACMY ABC-2 domain containing protein Length = 264 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 100/263 (38%), Positives = 143/263 (54%), Gaps = 2/263 (0%) Query: 7 ATAARNQRANLRAFPWAFTLGHMIEGGXXXXXXXXXXXXXIQGDLDNRFALYAGSGNYLA 66 AT R+ RA+PW+F LGH++ G QG LD FA + +YL+ Sbjct: 2 ATFRRDFYTMRRAYPWSFFLGHILTGVYIVLFAYLTYHFMFQGKLDANFAKLGKTDDYLS 61 Query: 67 YAIIGGALNVFSISMMMNVSRALITEWREGTLEALLLSPSSRNGYFLGTALQQFYRSGMV 126 Y I+G FS+S++M VSR LITE REGTL+ LLL+PSSR GYFLG A Q R G+ Sbjct: 62 YVILGAVFYSFSVSLLMIVSRTLITELREGTLDVLLLTPSSRQGYFLGAAAQGILRVGLE 121 Query: 127 LLAVLVFGILAGMRLSAPPLLSAGIGGVLFILSCYAMALVLGSIMLYTRDTYIVQNTLFA 186 + + +FG+ G++ ++ + +F + +A ALVLG+ MLY RDTY+ QNTLF Sbjct: 122 FITIFIFGLFFGLQFREINMIPVVLLLFIFFFAIFAQALVLGAFMLYFRDTYLTQNTLFI 181 Query: 187 VTTLLCGFQFPRQYLPGFLQTAGEVFPXXXXXXXXXXXXXXGEAI-PLRDTLPALL-LSL 244 +L+ G FP YLP FLQ + P G + ++ L LL L + Sbjct: 182 FMSLVSGVFFPVGYLPAFLQPMSVLMPLSHGLSAFRLCMIEGGNLASIQIELMWLLGLGV 241 Query: 245 VYIAVGMWSNRLVERGLFEKHQA 267 Y G+++ + +E+ + EKH A Sbjct: 242 AYFIAGVYAMKRMEKYVIEKHFA 264 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,298,146,552 Number of extensions: 44862537 Number of successful extensions: 150643 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 151079 Number of HSP's successfully gapped: 32 Length of query: 267 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 134 Effective length of database: 1,807,701,208 Effective search space: 242231961872 Effective search space used: 242231961872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)