BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0009.p
         (130 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q24VL2.1 Q24VL2_DESHY Putative uncharacterized protein                105   1e-21
B8G2I9.1 B8G2I9_DESHD Transcriptional regulator, ArsR family          105   1e-21
C0ZJW8.1 C0ZJW8_BREBN Probable transcriptional regulator               94   5e-18
C3B1T6.1 C3B1T6_BACMY Transcriptional regulator, ArsR                  83   6e-15
C3BIK2.1 C3BIK2_9BACI Transcriptional regulator, ArsR                  83   6e-15

>Q24VL2.1 Q24VL2_DESHY Putative uncharacterized protein
          Length = 337

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 80/130 (61%)

Query: 1   LQNVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRLR 60
           +  + V PSTFI PHLL+     ++ +  AV +PG    +A P DLL    A+ D +R++
Sbjct: 204 ISGIMVRPSTFIAPHLLMGTNEAAVTVGYAVTVPGAERYDAVPRDLLGIMNAMSDESRMK 263

Query: 61  ILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTSHKEAFGRL 120
           IL+ ++  P+CT+QLA +  +SEA VSK LK+LS AGL  ++RKGNY+FY   +     +
Sbjct: 264 ILRQVFYHPYCTQQLAEMYNLSEATVSKHLKILSRAGLVYSQRKGNYVFYYGDRNRIQLI 323

Query: 121 IVLQRQYLEQ 130
            V   Q+ +Q
Sbjct: 324 PVDLNQFFDQ 333


>B8G2I9.1 B8G2I9_DESHD Transcriptional regulator, ArsR family
          Length = 350

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 80/130 (61%)

Query: 1   LQNVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRLR 60
           +  + V PSTFI PHLL+     ++ +  AV +PG    +A P DLL    A+ D +R++
Sbjct: 204 ISGIMVRPSTFIAPHLLMGTNEAAVTVGYAVTVPGAERYDAVPRDLLGIMNAMSDESRMK 263

Query: 61  ILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTSHKEAFGRL 120
           IL+ ++  P+CT+QLA +  +SEA VSK LK+LS AGL  ++RKGNY+FY   +     +
Sbjct: 264 ILRQVFYHPYCTQQLAEMYNLSEATVSKHLKVLSRAGLVYSQRKGNYVFYYGDRNRIQLI 323

Query: 121 IVLQRQYLEQ 130
            V   Q+ +Q
Sbjct: 324 PVDLNQFFDQ 333


>C0ZJW8.1 C0ZJW8_BREBN Probable transcriptional regulator
          Length = 365

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 67/112 (59%)

Query: 1   LQNVYVLPSTFIFPHLLIDWTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRLR 60
           L  V++  STF+ PHLL+    D + + L+VD+PG   +   P D + + K   D TR  
Sbjct: 217 LARVHLRVSTFVAPHLLLGIYDDHISVCLSVDVPGTRATSVIPADFISKMKVFSDPTRTA 276

Query: 61  ILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTS 112
           ILK L   P+CT+QLA +  ISE AV+K L LL + G   +ER+G Y+FY +
Sbjct: 277 ILKSLLAHPYCTQQLADLHNISEPAVNKHLNLLVDTGFIWSERRGRYVFYRA 328


>C3B1T6.1 C3B1T6_BACMY Transcriptional regulator, ArsR
          Length = 341

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 1   LQNVYVLPSTFIFPHLLID-WTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRL 59
           L  + + PSTF+ PHLLID   +  + +   V+I      E P +DLLR  +A+ D TRL
Sbjct: 199 LSAITLYPSTFVAPHLLIDNLISTHIKVYYEVEIASSYTDEVP-KDLLRILQAISDETRL 257

Query: 60  RILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTSHKEAFGR 119
           ++L+ L     CT+QL     ++++ VS  LK+L   GL   ERKG Y+FY +++E   +
Sbjct: 258 KMLRDLSFQSFCTQQLTERYSLTKSTVSNHLKMLESTGLIQKERKGYYVFYKTNRERLEQ 317

Query: 120 LIVLQRQYLE 129
           + V   Q+++
Sbjct: 318 IRVDLDQFMD 327


>C3BIK2.1 C3BIK2_9BACI Transcriptional regulator, ArsR
          Length = 341

 Score = 83.2 bits (204), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 75/130 (57%), Gaps = 2/130 (1%)

Query: 1   LQNVYVLPSTFIFPHLLID-WTADSLVLPLAVDIPGLPCSEAPPEDLLRQFKALGDATRL 59
           L  + + PSTF+ PHLLID   +  + +   V+I      E P +DLLR  +A+ D TRL
Sbjct: 199 LSAITLYPSTFVAPHLLIDNLISTHIKVYYEVEIASSYTDEVP-KDLLRILQAISDETRL 257

Query: 60  RILKLLWQGPHCTKQLAPILGISEAAVSKQLKLLSEAGLAGAERKGNYLFYTSHKEAFGR 119
           ++L+ L     CT+QL     ++++ VS  LK+L   GL   ERKG Y+FY +++E   +
Sbjct: 258 KMLRDLSFQSFCTQQLTERYSLTKSTVSNHLKMLESTGLIQKERKGYYVFYKTNRERLEQ 317

Query: 120 LIVLQRQYLE 129
           + V   Q+++
Sbjct: 318 IRVDLDQFMD 327


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 764,596,409
Number of extensions: 27691363
Number of successful extensions: 79571
Number of sequences better than 1.0e-05: 343
Number of HSP's gapped: 80161
Number of HSP's successfully gapped: 343
Length of query: 130
Length of database: 3,060,696,203
Length adjustment: 95
Effective length of query: 35
Effective length of database: 2,165,699,778
Effective search space: 75799492230
Effective search space used: 75799492230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)