BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0369.0008.p
         (205 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8G2I9.1 B8G2I9_DESHD Transcriptional regulator, ArsR family           93   2e-17
Q24VL2.1 Q24VL2_DESHY Putative uncharacterized protein                 91   6e-17
C3B1T6.1 C3B1T6_BACMY Transcriptional regulator, ArsR                  60   1e-07
C3BIK2.1 C3BIK2_9BACI Transcriptional regulator, ArsR                  60   1e-07
C3AJY3.1 C3AJY3_BACMY Transcriptional regulator, ArsR                  60   1e-07

>B8G2I9.1 B8G2I9_DESHD Transcriptional regulator, ArsR family
          Length = 350

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 94/182 (51%), Gaps = 7/182 (3%)

Query: 10  SPFHELLCSLHVLYQPEHHPKRLQWARDIKRQMPPDLLEAIDTLGRLSDEWMGLMLPGRS 69
           SPF E++ SLHVL  PEHH  RL WAR+ +  + P L   +  LG++S++W+ L      
Sbjct: 6   SPFLEMVASLHVLQDPEHHLGRLNWARETEALLSPALKRQLVELGKISNDWLNLYDLHDL 65

Query: 70  GAPLPAA--GGINLLNDLPDAEFIHLLLNNKVSLGTILEWQQGSSGANRKSGDGPDETSQ 127
           G    ++   GI  L  + + +F++ LL   + L  + +W QG+     +         +
Sbjct: 66  GNFQESSVEEGIERLLAVEERQFVYCLLGQVMPLDHVDQWLQGNEVDKEQW-----RKQR 120

Query: 128 YLLQHTAAVRTQLIKTLETYERDYFRKEWDYVMPWINTAAAQFQESVSRSAEKALNTLHP 187
            LL   A  R Q  + L TY ++YF KE   + PW+ ++   FQE + +   +A+ ++HP
Sbjct: 121 PLLLKPATWRRQFAEVLFTYYQEYFSKELRRIEPWLISSVHTFQERLRKEPLEAMESIHP 180

Query: 188 RL 189
           R 
Sbjct: 181 RF 182


>Q24VL2.1 Q24VL2_DESHY Putative uncharacterized protein
          Length = 337

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 95/183 (51%), Gaps = 9/183 (4%)

Query: 10  SPFHELLCSLHVLYQPEHHPKRLQWARDIKRQMPPDLLEAIDTLGRLSDEWMGLMLPGRS 69
           SPF E++ SLHVL  PEHH  RL WAR+ +  + P L   +  LG++S++W+ L      
Sbjct: 6   SPFLEMVASLHVLQDPEHHLGRLNWARETEALLSPALKRQLVKLGQISNDWLNLYDLHDL 65

Query: 70  GAPLPAA--GGINLLNDLPDAEFIHLLLNNKVSLGTILEWQQGSSGANRK-SGDGPDETS 126
           G    ++   GI  L  + + +F++ LL   + L  + +W QG+     +   + P    
Sbjct: 66  GNFQESSVEEGIEKLLAVEERQFVYCLLGQVMPLDHVDQWLQGNEVDKEQWRKERP---- 121

Query: 127 QYLLQHTAAVRTQLIKTLETYERDYFRKEWDYVMPWINTAAAQFQESVSRSAEKALNTLH 186
             LL   A  R Q  + L TY ++YF +E   + PW+ ++   FQE + +   +A+ ++H
Sbjct: 122 --LLLKPATWRRQFAEVLFTYYQEYFSQELRRIEPWLISSVHTFQERLRKEPLEAMESIH 179

Query: 187 PRL 189
           PR 
Sbjct: 180 PRF 182


>C3B1T6.1 C3B1T6_BACMY Transcriptional regulator, ArsR
          Length = 341

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 1  LQRKVTTVVSPFHELLCSLHVLYQPEHHPKRLQWARDIKRQMPPDLLEAIDTLGRLSDEW 60
           +R V  V SPF E+L SLHVL  P HH KRL+WA ++  QM  +  E +  +   SD+W
Sbjct: 26 FERHVKVVYSPFREMLLSLHVLSNPTHHVKRLEWAENVLNQMDQEEKEILYEINEKSDDW 85

Query: 61 MGLM 64
          +  +
Sbjct: 86 LHFI 89


>C3BIK2.1 C3BIK2_9BACI Transcriptional regulator, ArsR
          Length = 341

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 1  LQRKVTTVVSPFHELLCSLHVLYQPEHHPKRLQWARDIKRQMPPDLLEAIDTLGRLSDEW 60
           +R V  V SPF E+L SLHVL  P HH KRL+WA ++  QM  +  E +  +   SD+W
Sbjct: 26 FERHVKVVYSPFREMLLSLHVLSNPTHHVKRLEWAENVLNQMDQEEKEILYEINEKSDDW 85

Query: 61 MGLM 64
          +  +
Sbjct: 86 LHFI 89


>C3AJY3.1 C3AJY3_BACMY Transcriptional regulator, ArsR
          Length = 323

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 1  LQRKVTTVVSPFHELLCSLHVLYQPEHHPKRLQWARDIKRQMPPDLLEAIDTLGRLSDEW 60
           +R V  V SPF E+L SLHVL  P HH KRL+WA ++  QM  +  E +  +   SD+W
Sbjct: 8  FERHVKVVYSPFREMLLSLHVLSNPTHHVKRLEWAENVLNQMDQEEKEILYEINEKSDDW 67

Query: 61 MGLM 64
          +  +
Sbjct: 68 LHFI 71


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,230,716,447
Number of extensions: 51558767
Number of successful extensions: 108989
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 108989
Number of HSP's successfully gapped: 6
Length of query: 205
Length of database: 3,060,696,203
Length adjustment: 129
Effective length of query: 76
Effective length of database: 1,845,385,268
Effective search space: 140249280368
Effective search space used: 140249280368
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)