BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0007.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIM2.1 B3KIM2_9BACI Molybdenum cofactor synthesis domain protein 228 2e-58 A8VXP7.1 A8VXP7_9BACI Cytochrome c assembly protein 219 6e-56 Q9K8I4.1 MOAB_BACHD Molybdenum cofactor biosynthesis protein B 212 9e-54 O34457.1 MOAB_BACSU Molybdenum cofactor biosynthesis protein B 199 6e-50 C0Z9D2.1 C0Z9D2_BREBN Molybdenum cofactor biosynthesis protein B 198 1e-49 >B3KIM2.1 B3KIM2_9BACI Molybdenum cofactor synthesis domain protein Length = 172 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/169 (66%), Positives = 135/169 (79%) Query: 4 LSSVDEHRREAPQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYED 63 ++S EH++++P SV C VITVSDTRT +TD G L+ +LEEAG+ V +IV DDYE Sbjct: 1 MNSTQEHKQQSPASVNCMVITVSDTRTKDTDKSGKLMIGLLEEAGHAVVAYSIVPDDYET 60 Query: 64 IRELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIG 123 IRE +Y ++ I+ VLLTGGTGIS RDTTYEAV+SLLDK LPGFGEIFR LSFT+DIG Sbjct: 61 IRETIYSAASAPEIDIVLLTGGTGISSRDTTYEAVSSLLDKELPGFGEIFRFLSFTEDIG 120 Query: 124 SAAILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREIYK 172 SAAILSRAI GTI TAVFSMPGS+GA+KLAM R+++PELRHV E+ K Sbjct: 121 SAAILSRAIGGTISHTAVFSMPGSSGAVKLAMNRILLPELRHVKYELDK 169 >A8VXP7.1 A8VXP7_9BACI Cytochrome c assembly protein Length = 170 Score = 219 bits (559), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 106/167 (63%), Positives = 131/167 (78%) Query: 6 SVDEHRREAPQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIR 65 SV+EH++EAP+ V C ++TVSDTRT ETD G L++T LE+AG+ V IVKDDY I+ Sbjct: 2 SVEEHKKEAPERVVCMILTVSDTRTKETDKSGHLMKTKLEDAGHAVYRHEIVKDDYSGIQ 61 Query: 66 ELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSA 125 + V + H IEA+L+ GGTGI+ RDTTYEAV+ +LDK LPGFGE+FR LSF DIG A Sbjct: 62 KWVRFADQHDEIEALLINGGTGITFRDTTYEAVSDMLDKELPGFGELFRYLSFEKDIGPA 121 Query: 126 AILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREIYK 172 A+LSRA AG G TAVFS PGS+GA+KLAM++LIIPEL H+MREIYK Sbjct: 122 AMLSRATAGVRGQTAVFSTPGSSGAVKLAMDQLIIPELAHMMREIYK 168 >Q9K8I4.1 MOAB_BACHD Molybdenum cofactor biosynthesis protein B Length = 170 Score = 212 bits (540), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 104/167 (62%), Positives = 130/167 (77%) Query: 6 SVDEHRREAPQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIR 65 SV++HR+EAP++V C ++T+SDTRT +TD GALIR +LE G+ V IVKD+Y I+ Sbjct: 2 SVEQHRKEAPKTVRCMILTISDTRTYDTDKSGALIRELLEAKGHQVTEYQIVKDEYSQIQ 61 Query: 66 ELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSA 125 + ++ + I+A+LL GGTGI+ RDTTYEAV LDK +PGFGEIFRLLSF +DIG+A Sbjct: 62 HWLKVAAGRADIDAILLNGGTGIALRDTTYEAVRDSLDKEMPGFGEIFRLLSFQEDIGTA 121 Query: 126 AILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREIYK 172 AILSRAIAG A+FSMPGSTGA+KLAM R+IIPEL HVMREI K Sbjct: 122 AILSRAIAGVRDGKAIFSMPGSTGAVKLAMTRIIIPELGHVMREILK 168 >O34457.1 MOAB_BACSU Molybdenum cofactor biosynthesis protein B Length = 170 Score = 199 bits (507), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 101/167 (60%), Positives = 123/167 (73%) Query: 6 SVDEHRREAPQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIR 65 SV EH++EAP V C VITVSDTRT ETD G L+ + LEEAG+ +A IVKD+ + ++ Sbjct: 2 SVQEHKQEAPDIVRCKVITVSDTRTDETDKSGKLMISFLEEAGHHIAAYEIVKDEKDALQ 61 Query: 66 ELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSA 125 V + +AVLL GGTGI+ RD T EA+ L K LPGFGEIFR+LS+T+DIGSA Sbjct: 62 RSVLAGCMDEQTDAVLLNGGTGIADRDVTIEAITPLFSKELPGFGEIFRMLSYTEDIGSA 121 Query: 126 AILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREIYK 172 AI+SRA AG I TAVFS PGS+GA+KLAM +LIIPEL HV+REI K Sbjct: 122 AIMSRATAGVIQHTAVFSTPGSSGAVKLAMNKLIIPELAHVVREIRK 168 >C0Z9D2.1 C0Z9D2_BREBN Molybdenum cofactor biosynthesis protein B Length = 168 Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/167 (56%), Positives = 123/167 (73%) Query: 6 SVDEHRREAPQSVACYVITVSDTRTPETDTGGALIRTMLEEAGYVVAGSTIVKDDYEDIR 65 S EH+ +P+ V C VITVSDTRT +TD G L++ +L EAG+ VA IVKD+ + Sbjct: 2 STQEHKALSPKQVTCMVITVSDTRTEDTDKSGQLMKQLLTEAGHSVALYQIVKDEPVQVI 61 Query: 66 ELVYKSSVHSGIEAVLLTGGTGISPRDTTYEAVASLLDKTLPGFGEIFRLLSFTDDIGSA 125 + H ++ +LL GGTGISPRD T+EAV+ LLDK +PGFGE+FR+LSFT+DIGSA Sbjct: 62 AAIEAGIAHEDVQVILLNGGTGISPRDNTFEAVSGLLDKEMPGFGELFRMLSFTEDIGSA 121 Query: 126 AILSRAIAGTIGSTAVFSMPGSTGAIKLAMERLIIPELRHVMREIYK 172 A+LSRAIAGT +FS PGSTGA++LAM RLI+PEL HV+RE+ + Sbjct: 122 AMLSRAIAGTRKGKMIFSTPGSTGAVRLAMNRLIVPELGHVVRELNR 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,030,112,730 Number of extensions: 41216960 Number of successful extensions: 118426 Number of sequences better than 1.0e-05: 1325 Number of HSP's gapped: 117188 Number of HSP's successfully gapped: 1325 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)