BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0004.p (178 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3ZE79.1 B3ZE79_BACCE Putative ABC transporter, ATP-binding protein 95 3e-18 C2W0D8.1 C2W0D8_BACCE ABC transporter, ATP-binding protein 94 6e-18 C2QIN5.1 C2QIN5_BACCE ABC transporter, ATP-binding protein 94 6e-18 C2ZVR3.1 C2ZVR3_BACCE ABC transporter, ATP-binding protein 94 6e-18 C2ZE60.1 C2ZE60_BACCE ABC transporter, ATP-binding protein 94 6e-18 >B3ZE79.1 B3ZE79_BACCE Putative ABC transporter, ATP-binding protein Length = 277 Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 75/139 (53%), Gaps = 2/139 (1%) Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78 L+EL K YG+ +L+++ L + G A A+IG NG+GKSTLL I+AG T ++GT+ R Sbjct: 2 LVELRGIQKKYGKSLILDKIDLSIPEGEALAIIGGNGTGKSTLLKIIAGFTSPTAGTIQR 61 Query: 79 YERRLTIGYAPEAFP-GLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXXVFHLEEFRRQS 137 E + IGY PE FP G++FT E Y FHL R Sbjct: 62 KE-HIQIGYVPEHFPEGIRFTLEDYLYHLGHIHGLSTKYVKDKIPMLLESFHLHHARHSV 120 Query: 138 MAGFSKGMLQKVNLIQSLL 156 + FSKGM QK ++Q+LL Sbjct: 121 VRNFSKGMKQKTGIMQALL 139 >C2W0D8.1 C2W0D8_BACCE ABC transporter, ATP-binding protein Length = 277 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 75/139 (53%), Gaps = 2/139 (1%) Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78 L+EL K YG+ +L+++ L + G A A+IG NG+GKSTLL I+AG ++GT+ R Sbjct: 2 LVELRGIQKKYGKSLILDKIDLSIPEGEALAIIGGNGTGKSTLLKIIAGFISPTAGTIQR 61 Query: 79 YERRLTIGYAPEAFP-GLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXXVFHLEEFRRQS 137 E + IGY PE FP G++FT E Y FHL R + Sbjct: 62 KE-HIQIGYVPEHFPEGIRFTLEDYLYHLGHIHGLSTKYVKDKIPMLLESFHLHHARHSA 120 Query: 138 MAGFSKGMLQKVNLIQSLL 156 + FSKGM QK ++Q+LL Sbjct: 121 VRNFSKGMKQKTGIMQALL 139 >C2QIN5.1 C2QIN5_BACCE ABC transporter, ATP-binding protein Length = 277 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78 L+EL K YG+ +L+ + L V G A A+IG NG+GKSTLL I+AG ++GTL R Sbjct: 2 LVELRGIQKKYGKSLILDNIDLSVPEGEALAIIGGNGTGKSTLLKIIAGFISPTAGTLQR 61 Query: 79 YERRLTIGYAPEAFP-GLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXXVFHLEEFRRQS 137 E + IGY PE FP G++FT E Y FHL R Sbjct: 62 KE-HIQIGYVPEHFPEGIRFTLEDYLYHLGHIHGLSTKYLKDKIPMLLESFHLHHARHSV 120 Query: 138 MAGFSKGMLQKVNLIQSLL 156 + FSKGM QK ++Q+LL Sbjct: 121 VRNFSKGMKQKTGIMQALL 139 >C2ZVR3.1 C2ZVR3_BACCE ABC transporter, ATP-binding protein Length = 277 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78 L+EL K YG+ +L+ + L + G A A+IG NG+GKSTLL I+AG ++GTL R Sbjct: 2 LVELKGIQKKYGKSLILDNIDLSIPEGEALAIIGGNGTGKSTLLKIIAGFISPTTGTLQR 61 Query: 79 YERRLTIGYAPEAFP-GLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXXVFHLEEFRRQS 137 E + IGY PE FP G++FT E Y FHL R Sbjct: 62 KE-HIQIGYVPEHFPEGIRFTLEDYLYHLGHIHGLSTKYLKDKIPMLLESFHLHHARHSV 120 Query: 138 MAGFSKGMLQKVNLIQSLLA 157 + FSKGM QK ++Q+LL Sbjct: 121 VRNFSKGMKQKTGIMQALLT 140 >C2ZE60.1 C2ZE60_BACCE ABC transporter, ATP-binding protein Length = 277 Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 73/140 (52%), Gaps = 2/140 (1%) Query: 19 LIELTRATKFYGRRPVLNEVSLLVESGTATALIGRNGSGKSTLLSILAGLTKISSGTLVR 78 L+EL K YG+ +L+ + L + G A A+IG NG+GKSTLL I+AG ++GTL R Sbjct: 2 LVELKGIQKKYGKSLILDNIDLSIPEGEALAIIGGNGTGKSTLLKIIAGFISPTTGTLQR 61 Query: 79 YERRLTIGYAPEAFP-GLKFTAEQYXXXXXXXXXXXXXXXXXXXXXXXXVFHLEEFRRQS 137 E + IGY PE FP G++FT E Y FHL R Sbjct: 62 KE-HIQIGYVPEHFPEGIRFTLEDYLYHLGHIHGLSTKYLKDKIPMLLESFHLHHARHSV 120 Query: 138 MAGFSKGMLQKVNLIQSLLA 157 + FSKGM QK ++Q+LL Sbjct: 121 VRNFSKGMKQKTGIMQALLT 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 771,402,846 Number of extensions: 23235099 Number of successful extensions: 228127 Number of sequences better than 1.0e-05: 2373 Number of HSP's gapped: 229792 Number of HSP's successfully gapped: 2374 Length of query: 178 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 51 Effective length of database: 1,864,227,298 Effective search space: 95075592198 Effective search space used: 95075592198 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)