BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0369.0002.p (232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIM7.1 B3KIM7_9BACI Putative uncharacterized protein 135 3e-30 A7GU29.1 A7GU29_BACCN ABC transporter, permease 64 1e-08 B7HSU0.1 B7HSU0_BACC7 Putative membrane protein 59 3e-07 B5VA25.1 B5VA25_BACCE Putative membrane protein 59 3e-07 C3FRW2.1 C3FRW2_BACTB ABC transporter, permease 59 4e-07 >B3KIM7.1 B3KIM7_9BACI Putative uncharacterized protein Length = 243 Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 117/232 (50%), Gaps = 12/232 (5%) Query: 3 YLLRSYTISQRYFGPVAGTIIAVLILYSYTPNPVMNSYAATAIILFAGSAWLGLSFLNHE 62 YLL SYT S RYF P+A +I+V+ LYSY PNP+M+SYA TA LF GSAWLGL+F NH+ Sbjct: 8 YLLASYTRSYRYFAPIAFMLISVVFLYSYRPNPIMDSYAVTAAFLFVGSAWLGLNFHNHD 67 Query: 63 HPVQRQVSIVQARSKMRYNXXXXXXXXXXXXXXXXXXVIFPVVTGKFDEPAGLYRMXXXX 122 Q + IV + +R+ V++PV+ G FD+P Y Sbjct: 68 QGRQTMLLIVHSGKALRFYAAQYITVSLLSILFSAFAVLYPVMFGMFDKPITFYEFALGY 127 Query: 123 XXXXXXXXXXXXVSLYLQASWVPKTSYAAGLLLTVLIISIGANKMS-------AIIPGPY 175 +S++ Q ++ AAGLL V+I+S+ + IIP Sbjct: 128 VGHVAMSLLGISLSVFFQFGFMENQGRAAGLLFIVIIVSLAGQSIVQFDHAYWGIIP--- 184 Query: 176 VHLLLPPAAPVMDVLMNADNLSLMRVTGAFVHALVYIVLLIGFYLYRSSRMD 227 LLPP + +MD+ M+AD S ++ +Y +L+ YL+ +SR D Sbjct: 185 --YLLPPVSVMMDLFMHADERSPAVKLLTIAYSFIYGFILLAVYLWTASRKD 234 >A7GU29.1 A7GU29_BACCN ABC transporter, permease Length = 229 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 7/227 (3%) Query: 1 MVYLLR----SYTISQRYFGPVAGTIIAVLILYSYTPNPVMNSYAATAIILFAGSAWLGL 56 M+ L+R YT S +Y P+A I+++L +Y+Y PNP++++Y TA++L+ +AW+ + Sbjct: 1 MIALIRYNFLDYTKSYKYIPPIAMYIVSLLFVYAYKPNPIVSTYLETALMLYLLAAWITI 60 Query: 57 SFLNHEHPVQRQVSIVQARSKMRYNXXXXXXXXXXXXXXXXXXVIFPVVTGKFDEPAGLY 116 + + E PVQ Q+++ ++ VI+P+ F E L Sbjct: 61 TLFHTEDPVQEQITLSHTKNIRTLYLGKYGTALLICSILSLISVIYPIAFQMFKEKMTLS 120 Query: 117 RMXXXXXXXXXXXXXXXXVSLYLQASWVPKTSYAAGLLLTVLIISIGANKMSAIIPGPYV 176 ++ + + K S A L +L+I+I + ++ P + Sbjct: 121 LFITGFLSHFSLSILGVSIATLFTRNIIKKASTAWLSLSFILLITIASIRLKK--EWPEL 178 Query: 177 HLLLPPAAPVMDVLMNADNLSLMRV-TGAFVHALVYIVLLIGFYLYR 222 + PP M + NL++ + A+ A +I++++ YL R Sbjct: 179 LWIFPPINDFMMLSSYKHNLAIHTLWLTAWSLAYSFILMILFLYLAR 225 >B7HSU0.1 B7HSU0_BACC7 Putative membrane protein Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%) Query: 3 YLLRSYTISQRYFGPVAGTIIAVLILYSYTPNPVMNSYAATAIILFAGSAWLGLSFLNHE 62 Y YT S +Y P+A +++L +Y+Y P P++ +Y TAI L+ SAW+ ++ + E Sbjct: 7 YHFLDYTKSYKYVPPIAMYFMSLLFVYTYKPTPIVPTYLETAIALYLLSAWITVTIFHTE 66 Query: 63 HPVQRQVSIVQARSKMRYNXXXXXXXXXXXXXXXXXXVIFPVVTGKFDE 111 PVQ Q++I + VI+P++ F+E Sbjct: 67 DPVQEQITISHTNNISALYVGKYITALLICTVLSFISVIYPIILQMFNE 115 >B5VA25.1 B5VA25_BACCE Putative membrane protein Length = 226 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 53/109 (48%) Query: 3 YLLRSYTISQRYFGPVAGTIIAVLILYSYTPNPVMNSYAATAIILFAGSAWLGLSFLNHE 62 Y YT S +Y P+A +++L +Y+Y P P++ +Y TAI L+ SAW+ ++ + E Sbjct: 7 YHFLDYTKSYKYVPPIAMYFMSLLFVYTYKPTPIVPTYLETAIALYLLSAWITVTIFHTE 66 Query: 63 HPVQRQVSIVQARSKMRYNXXXXXXXXXXXXXXXXXXVIFPVVTGKFDE 111 PVQ Q++I + VI+P++ F+E Sbjct: 67 DPVQEQITISHTNNISALYVGKYITALLICTVLSFISVIYPIILQMFNE 115 >C3FRW2.1 C3FRW2_BACTB ABC transporter, permease Length = 226 Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%) Query: 3 YLLRSYTISQRYFGPVAGTIIAVLILYSYTPNPVMNSYAATAIILFAGSAWLGLSFLNHE 62 Y YT S +Y P+A +++L +Y+Y P P++ +Y TA+ L+ SAW+ ++ + E Sbjct: 7 YHFLDYTKSYKYVPPIAMYFVSLLFVYTYKPTPIVPTYLETALALYLLSAWITVTIFHTE 66 Query: 63 HPVQRQVSIVQARSKMRYNXXXXXXXXXXXXXXXXXXVIFPVVTGKFDE 111 PVQ Q++I + VI+P++ F+E Sbjct: 67 DPVQEQITISHTNNISALYLGKYITALLICTVLSFISVIYPIILQMFNE 115 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,119,000,483 Number of extensions: 37137680 Number of successful extensions: 117808 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 117804 Number of HSP's successfully gapped: 58 Length of query: 232 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 101 Effective length of database: 1,826,543,238 Effective search space: 184480867038 Effective search space used: 184480867038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)