BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0036.p (459 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DDS5.1 B1DDS5_9BACL Peptidoglycan-binding LysM 167 2e-39 B3KL17.1 B3KL17_9BACI Peptidoglycan-binding LysM 122 6e-26 Q5WEP9.1 Q5WEP9_BACSK Stage VI sporulation protein D 72 1e-10 Q9K8G4.1 Q9K8G4_BACHD Stage VI sporulation protein D 70 6e-10 P37963.1 SP6D_BACSU Stage VI sporulation protein D 65 2e-08 >B1DDS5.1 B1DDS5_9BACL Peptidoglycan-binding LysM Length = 465 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/151 (58%), Positives = 108/151 (71%), Gaps = 5/151 (3%) Query: 3 DQSHGLRFDIYERIHLPAELPGIAELEEVELIPDIQVIQREDRAELYGQLLLTGLYRGED 62 DQS GLRFD+YERIHLP E+ I ELEE+EL P IQVI++ D A L GQLLL G+YRG+ Sbjct: 3 DQSKGLRFDLYERIHLPDEVAAIDELEEIELTPRIQVIEQGDHAVLKGQLLLNGVYRGQS 62 Query: 63 D--RTQRLEHAIPVEITVPLTRVSSLDDIGVEIENFDIDLLTMRTVNITGVLSLRGIGSG 120 D Q LEH IPVEIT+PL RVS LDDI VEI+NFD+DLL+ RT+N+TGVLSLRGI Sbjct: 63 DGGSLQTLEHWIPVEITLPLNRVSRLDDISVEIDNFDVDLLSARTLNVTGVLSLRGILVE 122 Query: 121 ---ETQPAWQQEEYTVAYSAEEAGQRQEAPA 148 + + W++E TV + E + + E A Sbjct: 123 PLPDAEEVWREEPITVVHEREASNEESEFEA 153 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 56/145 (38%), Positives = 86/145 (59%), Gaps = 3/145 (2%) Query: 318 ASENELITAPDVQPVPE-EKPDLKIALGSKKEEKAEEREP-LTYSTLL-SSSRAHKEQEN 374 ASE E P+ VP+ +K +++I +GSK+ E E+ P + TLL +S R ++ Sbjct: 321 ASEAEWQAQPEAPRVPDNDKQEIRIGVGSKQPENNPEQAPNVGLMTLLQTSKREQAARQA 380 Query: 375 QHXXXXXXXXXXXXXXXGNDTEWKSRFIGGRGGTELFRKVRLCIVQREETLDTIAEKYQL 434 G+D EWK+ F+G + FRK+R+CIVQR+ETL++IA +Y L Sbjct: 381 AEEVAAQQAEQAKTRSSGDDIEWKTLFLGKQSEENEFRKIRVCIVQRDETLESIAVRYSL 440 Query: 435 SARELVMYNRLSGQNVEEGQVLYIP 459 + RE+++YN L+ +V EGQ+LYIP Sbjct: 441 NPREILLYNGLNESSVAEGQLLYIP 465 >B3KL17.1 B3KL17_9BACI Peptidoglycan-binding LysM Length = 449 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 62/124 (50%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 336 KPDLKIALGSKKEEKAEEREPLTYSTLLSSSRAHKEQENQHXXXXXXXXXXXXXXXGNDT 395 KP+LK+A +K A + +S+LL SSR ++Q+ D Sbjct: 326 KPELKVAFNAKNS-TANTASGVGFSSLLQSSRTVQDQDQAARDEEEAIEESVDAISSEDV 384 Query: 396 EWKSRFIGGRGGTELFRKVRLCIVQREETLDTIAEKYQLSARELVMYNRLSGQNVEEGQV 455 EWKS F+G R FRKVR+CIVQREETLD IAE+YQL+ REL++YNR+S QNVEEGQV Sbjct: 385 EWKSLFLGNRREETPFRKVRMCIVQREETLDVIAERYQLTPRELLLYNRMSEQNVEEGQV 444 Query: 456 LYIP 459 LYIP Sbjct: 445 LYIP 448 >Q5WEP9.1 Q5WEP9_BACSK Stage VI sporulation protein D Length = 377 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/55 (56%), Positives = 40/55 (72%) Query: 405 RGGTELFRKVRLCIVQREETLDTIAEKYQLSARELVMYNRLSGQNVEEGQVLYIP 459 R E F K ++CI+Q ETLDTIAE+Y+LSA +L YN L+ + V EGQ+LYIP Sbjct: 319 RNEVEQFTKWKMCIIQENETLDTIAERYELSASQLTRYNNLADEQVSEGQILYIP 373 >Q9K8G4.1 Q9K8G4_BACHD Stage VI sporulation protein D Length = 416 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 40/54 (74%) Query: 406 GGTELFRKVRLCIVQREETLDTIAEKYQLSARELVMYNRLSGQNVEEGQVLYIP 459 G E F K+++CI+Q E+LD IAE+Y +S L+ +NRL+ + VEEGQ+LYIP Sbjct: 354 NGEEEFSKLKMCIIQENESLDMIAERYDISTSHLIRFNRLTEERVEEGQILYIP 407 >P37963.1 SP6D_BACSU Stage VI sporulation protein D Length = 575 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 22/135 (16%) Query: 4 QSHGLRFDIYERIHLPAELPGIAELEEVELIPDIQVIQREDRAELYGQLLLTGLY----- 58 Q+H L+F + E I + ++EL + L PDI+V + D + G L LTG Y Sbjct: 3 QNHRLQFSVEESICF-QKGQEVSELLSISLDPDIRVQEVNDYVSIIGSLELTGEYNIDQN 61 Query: 59 ----------------RGEDDRTQRLEHAIPVEITVPLTRVSSLDDIGVEIENFDIDLLT 102 R +D + L H PV+IT+P +VS L D+ V I+ FD L Sbjct: 62 KHTEEIYTDKRFVEQVRKREDGSAELTHCFPVDITIPKNKVSHLQDVFVFIDAFDYQLTD 121 Query: 103 MRTVNITGVLSLRGI 117 R + I L++ G+ Sbjct: 122 SRILTIQADLAIEGL 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,591,619,060 Number of extensions: 105416853 Number of successful extensions: 320408 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 320326 Number of HSP's successfully gapped: 88 Length of query: 459 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 320 Effective length of database: 1,751,175,118 Effective search space: 560376037760 Effective search space used: 560376037760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 133 (55.8 bits)