BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0035.p (499 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0LMA1.1 A0LMA1_SYNFM Parallel beta-helix repeat 485 e-135 Q1IIB3.1 Q1IIB3_ACIBL Putative uncharacterized protein 401 e-110 Q2BCR9.1 Q2BCR9_9BACI YwoF 391 e-107 A8FIT0.1 A8FIT0_BACP2 Putative uncharacterized protein 376 e-102 B4AJP8.1 B4AJP8_BACPU Polysaccharide Lyase Family 9,YwoF 376 e-102 >A0LMA1.1 A0LMA1_SYNFM Parallel beta-helix repeat Length = 512 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/500 (50%), Positives = 343/500 (68%), Gaps = 16/500 (3%) Query: 1 VLGAVIGDMKAPAAHAEGPDYYVARTGSDTNPGTSSAPFKTLQHAADVAVAGSTVYVRGG 60 +L +VIG AP A YYVA TGSD NPGT + P++T+Q AA GS VYVR G Sbjct: 26 LLLSVIG--AAPVFSAT---YYVAVTGSDGNPGTRARPWRTVQKAARTVPPGSVVYVRAG 80 Query: 61 VYHQKLKITGSGSAAAGPITFTSYNSETAVIDGTGLSVSGAE-GIVDLTDANYITIQGFE 119 VYH++++++ SG+A G ITF +Y ETAV+DGTGL V AE G+ + D +YIT++GFE Sbjct: 81 VYHERVEVSVSGTADGGGITFRNYPHETAVLDGTGLVVPLAENGMFFIDDRDYITVKGFE 140 Query: 120 IRNYTTAAKNVMPAGIYVHGSGSYITLANNKIHDIKNTSTPAGSDLQGRDAHGIAVYGTK 179 IRNY T+ K+ +PAG++V G+ +I + NN+IH I++ G+ G DA GIAV+GT+ Sbjct: 141 IRNYRTSRKDAVPAGVHVRGASHHIRILNNRIHHIEHN----GTLETGTDAFGIAVFGTR 196 Query: 180 APASINNVRISGNELYNLVLGSSESLVLNGNVDTFSVTXXXXXXXXXXXXXXXXYEGTAP 239 S+NN+ I GNELY L LGSSESLV+NGNV+ F +T +EG +P Sbjct: 197 GAQSVNNLVIDGNELYALKLGSSESLVVNGNVEHFRITNNVVHDNNNIGIVAIGFEGVSP 256 Query: 240 NPSYDQARNGLVSGNRVYNITSNHNPSYGKKLPNNSNSAGGIYVDGGKDSIIERNYSYNN 299 + + DQAR+G+++ N VY I S NP+YG + SA GIYVDGG++ +IERN ++ Sbjct: 257 SEATDQARDGVIANNTVYRIDSYGNPAYG-----DDRSADGIYVDGGRNIVIERNIVHHC 311 Query: 300 DIGIEIASEHSGKSTSNITIRSNMVYGNRQTGIAMGGYDNQRGSTVNCTIVNNTLYKNDT 359 +IGIE+ASEH GK+T +T+R+N VY N TGI+MGGYD +RGS +CT+VNNTL++ND Sbjct: 312 NIGIELASEHFGKATRYVTVRNNFVYLNDITGISMGGYDTRRGSAEHCTVVNNTLFRNDR 371 Query: 360 IGAGAGQLYVQYDTKNNTIKNNIFAAGSTDVLIYNEYTKNSGNVVDYNLYYAPGGSSGAN 419 + G G+L +QY T+NN I+NNIF A + VLI N ++ NSGNVVDYN++YAP G + + Sbjct: 372 LQWGNGELCLQYKTRNNVIENNIFHANAQSVLISNAFSDNSGNVVDYNVFYAPDGPAESV 431 Query: 420 WTWKNTGYTGFTAYKSGTGNDAHSLFADPKFVNVSLSNFHLQTASPAIDAGSADTAVIGT 479 W WK YTGF AY++ TGND HS F +P+ V SL + HL+ SPA+DAG + AV GT Sbjct: 432 WQWKKVDYTGFAAYRTATGNDLHSRFVNPRLVGTSLPDLHLRATSPAVDAGR-NLAVAGT 490 Query: 480 LDIDGQARVKGAKVNIGADE 499 DIDGQ R+ ++IGADE Sbjct: 491 KDIDGQPRIHNHSIDIGADE 510 >Q1IIB3.1 Q1IIB3_ACIBL Putative uncharacterized protein Length = 502 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 214/482 (44%), Positives = 298/482 (61%), Gaps = 12/482 (2%) Query: 21 YYVARTGSDTNPGTSSAPFKTLQHAADVAVAGSTVYVRGGVYHQKLKITGSGSAAAGPIT 80 +YVA TG D+N GT +AP++T+QHAAD A AGSTV VRGG Y + + + SG+A+ G IT Sbjct: 24 FYVATTGKDSNAGTQAAPWRTIQHAADTARAGSTVNVRGGTYEELVSLHASGNASDGFIT 83 Query: 81 FTSYNSETAVIDGTGLSVSGAEGIVDLTDANYITIQGFEIRNYTTAAKNVMPAGIYVHGS 140 F SY E A+++ ++ G G++ + D +Y+ ++GFEIRN+ TA ++ P GI V G+ Sbjct: 84 FRSYPGEAAILEAEHITPPGRTGVLTIHDQSYVRVEGFEIRNFRTAEHDLAPLGIDVMGA 143 Query: 141 GSYITLANNKIHDIKNTSTPAGSDLQGRDAHGIAVYGTKAPASINNVRISGNELYNLVLG 200 GS+I L N +H I+ T G +A GIAVYGT A I ++ I GNE+++L G Sbjct: 144 GSHIELLKNNVHHIQQTFEGRDGPGHGANAFGIAVYGTSAKTPITDLVIDGNEVHHLKTG 203 Query: 201 SSESLVLNGNVDTFSVTXXXXXXXXXXXXXXXXYEGTAPNPSYDQARNGLVSGNRVYNIT 260 SSES+V+NGNV F +T +E TAP+P+ DQAR+GLVSGN VYNIT Sbjct: 204 SSESVVVNGNVTNFRITHNVVHDNNNIGIDVIGFEHTAPDPAVDQARDGLVSGNLVYNIT 263 Query: 261 SNHNPSYGKKLPNNSNSAGGIYVDGGKDSIIERNYSYNNDIGIEIASEHSGKSTSNITIR 320 S NP+Y N S+ GIYVDGG +IE N ++ D GIE+ASEH ++TS + R Sbjct: 264 SKGNPAY-----RNDESSDGIYVDGGTRILIEHNVVHDVDFGIELASEHKDRATSYVIAR 318 Query: 321 SNMVYGNRQTGIAMGGYDNQRGSTVNCTIVNNTLYKNDTIGAGAGQLYVQYDTKNNTIKN 380 +N+VY N G+++GGYD QRG T +CT++NNTLY +DT G+G+ +Q++ +N N Sbjct: 319 NNLVYHNHTAGVSIGGYDPQRGHTEHCTVINNTLYDDDTSATGSGEFQMQWNMADNIFAN 378 Query: 381 NIFAAGSTDVLIYNEYTKNSGNV---VDYNLYYAPGGSSGANWTWKNTG--YTGFTAYKS 435 NI AG ++ + G +D+NLYY G+ + TWKNT TGF Y Sbjct: 379 NIVYAGPQCLMTILKTEVKPGQPPANIDHNLYYCASGAKAS--TWKNTAATVTGFEEYSQ 436 Query: 436 GTGNDAHSLFADPKFVNVSLSNFHLQTASPAIDAGSADTAVIGTLDIDGQARVKGAKVNI 495 +GND +S F DP FV+ + +FHLQ S AI AG+ D +G LD+DG R K ++I Sbjct: 437 ASGNDRNSHFQDPHFVDAAAKDFHLQPDSKAIAAGAIDGMPVGALDLDGSPRTKSGNIDI 496 Query: 496 GA 497 G Sbjct: 497 GC 498 >Q2BCR9.1 Q2BCR9_9BACI YwoF Length = 463 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 206/441 (46%), Positives = 276/441 (62%), Gaps = 14/441 (3%) Query: 22 YVARTGSDTNPGTSSAPFKTLQHAADVAVAGSTVYVRGGVYHQKLKITGSGSAAAGPITF 81 YV+ GSD N G+ P KT+Q A D A G+ VYVR G+Y +++ I SGS A PI Sbjct: 35 YVSPDGSDKNSGSKQKPLKTIQKAVDSAEPGTVVYVREGIYKEQVVIRESGSKNA-PIMI 93 Query: 82 TSYNSETAVIDGTGLSVSGA-EGIVDLTDANYITIQGFEIRNYTTAAKNVMPAGIYVHGS 140 SY E AV+DGT L +G +G++ + + +YITI GFE+RNY TA ++V+P GI V GS Sbjct: 94 KSYKKEKAVLDGTSLKANGDNQGLISIHNKSYITIDGFEVRNYKTAEEDVVPIGISVSGS 153 Query: 141 GSYITLANNKIHDIKNTSTPAGSDLQGRDAHGIAVYGTKAPASINNVRISGNELYNLVLG 200 G I + N +H I+ +AHGIAVYGTKAP +I ++ IS N + +L LG Sbjct: 154 GKGIRILRNHVHHIETLHDNG-------NAHGIAVYGTKAPEAIEDIEISENLVEDLKLG 206 Query: 201 SSESLVLNGNVDTFSVTXXXXXXXXXXXXXXXXYEGTAPNPSYDQARNGLVSGNRVYNIT 260 SE++VLNGNV F VT +EGT+P +YDQARNGLVS N V I+ Sbjct: 207 WSEAIVLNGNVSHFKVTKNIVRQSNNIGIDMIGFEGTSPREAYDQARNGLVSHNTVCGIS 266 Query: 261 SNHNPSYGKKLPNNSNSAGGIYVDGGKDSIIERNYSYNNDIGIEIASEHSGKSTSNITIR 320 S NP+YG +AGGIYVDGGKD IE N Y NDIGIE ASEH GKSTS I+IR Sbjct: 267 SYGNPAYGPHY-----TAGGIYVDGGKDITIEENRVYQNDIGIEAASEHKGKSTSGISIR 321 Query: 321 SNMVYGNRQTGIAMGGYDNQRGSTVNCTIVNNTLYKNDTIGAGAGQLYVQYDTKNNTIKN 380 N+++ NR GIA+GGYD +RG+TV +I +N LYKND GQ+ +QY+TK+NTIKN Sbjct: 322 KNIIFENRSAGIAIGGYDEERGNTVKSSITDNVLYKNDREYQDGGQVLIQYNTKHNTIKN 381 Query: 381 NIFAAGSTDVLIYNEYTKNSGNVVDYNLYYAPGGSSGANWTWKNTGYTGFTAYKSGTGND 440 NI AG + +LI + + K+ GN +++N+YY GG W W+ +GF+ Y+ + D Sbjct: 382 NIMVAGESGLLISSPFRKSEGNSINHNMYYVSGGEKKTRWIWEEKEISGFSEYQKKSRQD 441 Query: 441 AHSLFADPKFVNVSLSNFHLQ 461 +S+F PKF++ + L+ Sbjct: 442 GNSVFQKPKFIDEGKKDLRLE 462 >A8FIT0.1 A8FIT0_BACP2 Putative uncharacterized protein Length = 475 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/459 (44%), Positives = 274/459 (59%), Gaps = 14/459 (3%) Query: 9 MKAPAAHAEGPDYYVARTGSDTNPGTSSAPFKTLQHAADVAVAGSTVYVRGGVYHQKLKI 68 M A + Y+VA G+D NPGT PF+TL+ AA +A AG+T+YVRGG Y +KL + Sbjct: 24 MTEEAGAKQSTAYHVATNGNDKNPGTKQKPFRTLKKAASMAKAGTTIYVRGGTYKEKLIV 83 Query: 69 TGSGSAAAGPITFTSYNSETAVIDGTGLSVSGAEG-IVDLTDANYITIQGFEIRNYTTAA 127 SG+ A P+ F +Y E VI G L + A+G +V + +YIT++G + + T Sbjct: 84 RHSGTKKA-PVIFQAYGKEKPVISGASLKGNQADGGLVTIDQKSYITLKGLTVGHLKTNK 142 Query: 128 KNVMPAGIYVHGSGSYITLANNKIHDIKNTSTPAGSDLQGRDAHGIAVYGTKAPASINNV 187 +++ P GI++ GSG + L NN+++DI+ T +AHGIAVYGTKAPA+I ++ Sbjct: 143 EDLTPVGIFIKGSGKGVKLLNNRVYDIQTTHKNG-------NAHGIAVYGTKAPAAIEDI 195 Query: 188 RISGNELYNLVLGSSESLVLNGNVDTFSVTXXXXXXXXXXXXXXXXYEGTAPNPSYDQAR 247 I GN + L LG SE+LVLNGNV F VT +E AP+ YDQ R Sbjct: 196 EIKGNTVEKLKLGFSEALVLNGNVTKFRVTHNTVRHTDNIGIDLIGFENVAPSKKYDQVR 255 Query: 248 NGLVSGNRVYNITSNHNPSYGKKLPNNSNSAGGIYVDGGKDSIIERNYSYNNDIGIEIAS 307 NG+VS N+VY ITS NP+YGK + SAGGIYVDGGKD +I+ N +++ND+GIE+ S Sbjct: 256 NGVVSRNKVYEITSVGNPAYGKDI-----SAGGIYVDGGKDIVIDHNITHHNDLGIEVTS 310 Query: 308 EHSGKSTSNITIRSNMVYGNRQTGIAMGGYDNQRGSTVNCTIVNNTLYKNDTIGAGAGQL 367 EH GK I I N VY NR TGI++GGYD +RG T N TI +N LYKNDT G GQL Sbjct: 311 EHKGKMADRIRIEHNQVYLNRYTGISIGGYDKKRGGTTNTTISHNILYKNDTAGLEGGQL 370 Query: 368 YVQYDTKNNTIKNNIFAAGSTDVLIYNEYTKNSGNVVDYNLYYAPGGSSGANWTWKNTGY 427 +QY NN I +NI A ++ L+ N Y N N+ N+Y G+ + W W+ Sbjct: 371 LMQYQAVNNRITSNIMTASASHYLVVNLYGVNQKNIFQKNVYDDRKGAKASQWVWRGKWM 430 Query: 428 TGFTAYKSGTGNDAHSLFADPKFVNVSLSNFHLQTASPA 466 G+ Y S +G D S +P+FVN +F L+ +SPA Sbjct: 431 EGYKTYLSKSGQDKGSAHLNPQFVNEKKYDFRLKKSSPA 469 >B4AJP8.1 B4AJP8_BACPU Polysaccharide Lyase Family 9,YwoF Length = 475 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/459 (43%), Positives = 274/459 (59%), Gaps = 14/459 (3%) Query: 9 MKAPAAHAEGPDYYVARTGSDTNPGTSSAPFKTLQHAADVAVAGSTVYVRGGVYHQKLKI 68 M A +G YYVA G+D +PGT PF+TL+ AA +A AG+ +YVRGG Y +KL + Sbjct: 24 MTEEAGAKQGTAYYVATNGNDKSPGTKQKPFRTLKKAASMARAGAIIYVRGGTYKEKLIV 83 Query: 69 TGSGSAAAGPITFTSYNSETAVIDGTGLSVSGAEG-IVDLTDANYITIQGFEIRNYTTAA 127 SG+ A P+ F +Y E VI G L + A+G +V + +YIT++G + + T Sbjct: 84 RHSGTKKA-PVIFQAYGKEKPVISGASLKGNQADGGLVTIDQKSYITLKGLTVGHLKTNK 142 Query: 128 KNVMPAGIYVHGSGSYITLANNKIHDIKNTSTPAGSDLQGRDAHGIAVYGTKAPASINNV 187 +++ P GI++ GSG + L NN+++DI+ T +AHGIAVYGTKAPA+I ++ Sbjct: 143 EDLTPVGIFIKGSGKGVKLLNNRVYDIQTTHKNG-------NAHGIAVYGTKAPAAIEDI 195 Query: 188 RISGNELYNLVLGSSESLVLNGNVDTFSVTXXXXXXXXXXXXXXXXYEGTAPNPSYDQAR 247 I GN + L LG SE+LVLNGNV F VT +E AP+ YDQ R Sbjct: 196 EIKGNTVEKLKLGFSEALVLNGNVKKFRVTHNTVRHTDNIGIDLIGFENVAPSKKYDQVR 255 Query: 248 NGLVSGNRVYNITSNHNPSYGKKLPNNSNSAGGIYVDGGKDSIIERNYSYNNDIGIEIAS 307 NG+VS N+VY ITS NP+YGK + SAGGIYVDGGKD +I+ N +++ND+GIE+ S Sbjct: 256 NGVVSRNKVYEITSVGNPAYGKDI-----SAGGIYVDGGKDIVIDHNITHHNDLGIEVTS 310 Query: 308 EHSGKSTSNITIRSNMVYGNRQTGIAMGGYDNQRGSTVNCTIVNNTLYKNDTIGAGAGQL 367 EH GK I I N VY NR TGI++GGYD +RG T N TI +N LYKNDT G GQL Sbjct: 311 EHKGKMADRIRIEHNQVYLNRYTGISIGGYDKKRGGTTNTTISHNILYKNDTAGLEGGQL 370 Query: 368 YVQYDTKNNTIKNNIFAAGSTDVLIYNEYTKNSGNVVDYNLYYAPGGSSGANWTWKNTGY 427 +QY NN I +NI A ++ L+ N Y N N+ N+Y G+ + W W+ Sbjct: 371 LMQYQAVNNRITSNIMTASASHYLVVNLYGVNQKNIFQKNVYDDRKGAKASQWVWRGKWM 430 Query: 428 TGFTAYKSGTGNDAHSLFADPKFVNVSLSNFHLQTASPA 466 G+ Y S +G D S +P+F+N +F L+ +SPA Sbjct: 431 EGYKTYLSKSGQDKGSAHLNPQFMNEKKYDFRLKKSSPA 469 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.310 0.129 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,171,750,294 Number of extensions: 147415526 Number of successful extensions: 328123 Number of sequences better than 1.0e-05: 136 Number of HSP's gapped: 327887 Number of HSP's successfully gapped: 147 Length of query: 499 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 359 Effective length of database: 1,741,754,103 Effective search space: 625289722977 Effective search space used: 625289722977 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 133 (55.8 bits)