BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0368.0028.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL22.1 B3KL22_9BACI Putative uncharacterized protein                 88   3e-16
B1DDR8.1 B1DDR8_9BACL Putative uncharacterized protein                 63   8e-09

>B3KL22.1 B3KL22_9BACI Putative uncharacterized protein
          Length = 80

 Score = 87.8 bits (216), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 51/79 (64%)

Query: 3  KKNVGXXXXXXXXXXXXXXXIAKLLEPVKGLSFLTASTVLKWSPQADLDIITYDITIHLK 62
          KKN G               +AK L+PVK LSFLT++T +KWSP AD DII YDI + L 
Sbjct: 2  KKNKGMLILFLLLGWLTGTWLAKALQPVKALSFLTSTTPIKWSPSADFDIIRYDINLELN 61

Query: 63 LCLLSLAGIITALWLYRRL 81
           CLLSL GII A+WLYRRL
Sbjct: 62 FCLLSLLGIIAAVWLYRRL 80


>B1DDR8.1 B1DDR8_9BACL Putative uncharacterized protein
          Length = 80

 Score = 63.2 bits (152), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 42/59 (71%)

Query: 23 IAKLLEPVKGLSFLTASTVLKWSPQADLDIITYDITIHLKLCLLSLAGIITALWLYRRL 81
          +A+ LEPV G+SFLT +    WSP  DL +++ D+ +H+++ L S+ G + A+WLYR++
Sbjct: 22 VARWLEPVSGISFLTKTIDTTWSPAVDLYVLSLDLNVHVQISLFSIIGALAAIWLYRKM 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 361,915,475
Number of extensions: 9462510
Number of successful extensions: 37310
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 37310
Number of HSP's successfully gapped: 2
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)