BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0026.p (209 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL24.1 B3KL24_9BACI DNA repair protein RadC 360 6e-98 C3IY45.1 C3IY45_9BACI DNA repair protein RadC 262 1e-68 B7Y630.1 B7Y630_9BACI DNA repair protein RadC 262 1e-68 Q5KWN3.1 RADC_GEOKA DNA repair protein radC homolog 262 1e-68 B4BQA2.1 B4BQA2_9BACI DNA repair protein RadC 260 7e-68 >B3KL24.1 B3KL24_9BACI DNA repair protein RadC Length = 229 Score = 360 bits (923), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 172/209 (82%), Positives = 192/209 (91%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 MM YGA +LS AELLAILLRTGTR ESA+HIAQR+LG AG +R L DLSIEE+T IKGIG Sbjct: 21 MMQYGASALSHAELLAILLRTGTRQESAVHIAQRLLGEAGGIRQLVDLSIEEITQIKGIG 80 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 AKAVQLKAGIELGRR+A SR EPVIIRSP DAAE+L+EQ+RYLQKEHFVC+FLNTKNH Sbjct: 81 TAKAVQLKAGIELGRRLAASRHVEPVIIRSPHDAAELLSEQMRYLQKEHFVCVFLNTKNH 140 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VIAQETLSMGSLNASIVHPREVFRAA+KCSSA+++CAHNHPSGDPTPSPEDISLT+RL++ Sbjct: 141 VIAQETLSMGSLNASIVHPREVFRAAIKCSSASLVCAHNHPSGDPTPSPEDISLTARLVE 200 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 AG+IVGIDVLDHLIIGD F+SLKE+G M Sbjct: 201 AGQIVGIDVLDHLIIGDGSFVSLKERGLM 229 >C3IY45.1 C3IY45_9BACI DNA repair protein RadC Length = 226 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 163/209 (77%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 ++ G ESLS EL+AILLRTGT+ ES + +AQR+L LR L D ++EE+TNIKGIG Sbjct: 18 LLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRSLKDATVEEMTNIKGIG 77 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 P KAVQ+ A +ELGRR+ S + +IR P+D A+ + E +R+L +EHFV ++LNTKN Sbjct: 78 PTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQ 137 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI ++T+ +GSLNASIVHPREVF+ A+K S+A++IC HNHPSGDPTPS EDI +T RL + Sbjct: 138 VIYRKTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAE 197 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 G I+GI++LDHLIIGD +F+SLKEKG++ Sbjct: 198 CGRIIGIELLDHLIIGDQKFVSLKEKGYV 226 >B7Y630.1 B7Y630_9BACI DNA repair protein RadC Length = 226 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/209 (58%), Positives = 163/209 (77%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 ++ G ESLS EL+AILLRTGT+ ES + +AQR+L LR L D ++EE+TNIKGIG Sbjct: 18 LLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRSLKDATVEEMTNIKGIG 77 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 P KAVQ+ A +ELGRR+ S + +IR P+D A+ + E +R+L +EHFV ++LNTKN Sbjct: 78 PTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQ 137 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI ++T+ +GSLNASIVHPREVF+ A+K S+A++IC HNHPSGDPTPS EDI +T RL + Sbjct: 138 VIYRKTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAE 197 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 G I+GI++LDHLIIGD +F+SLKEKG++ Sbjct: 198 CGRIIGIELLDHLIIGDQKFVSLKEKGYV 226 >Q5KWN3.1 RADC_GEOKA DNA repair protein radC homolog Length = 226 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 123/209 (58%), Positives = 163/209 (77%) Query: 1 MMHYGAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIG 60 ++ G ESLS EL+AILLRTGT+ ES + +AQR+L LR L D ++EE+TNIKGIG Sbjct: 18 LLSSGPESLSDHELIAILLRTGTKEESVVQLAQRLLRHFEGLRPLKDATVEEMTNIKGIG 77 Query: 61 PAKAVQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNH 120 P KAVQ+ A +ELGRR+ S + +IR P+D A+ + E +R+L +EHFV ++LNTKN Sbjct: 78 PTKAVQILAALELGRRIHQSGCADRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQ 137 Query: 121 VIAQETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQ 180 VI ++T+ +GSLNASIVHPREVF+ A+K S+A++IC HNHPSGDPTPS EDI +T RL + Sbjct: 138 VIYRKTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAE 197 Query: 181 AGEIVGIDVLDHLIIGDSRFISLKEKGFM 209 G I+GI++LDHLIIGD +FISLKEKG++ Sbjct: 198 CGRIIGIELLDHLIIGDQKFISLKEKGYV 226 >B4BQA2.1 B4BQA2_9BACI DNA repair protein RadC Length = 226 Score = 260 bits (664), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 123/205 (60%), Positives = 161/205 (78%) Query: 5 GAESLSQAELLAILLRTGTRAESAIHIAQRMLGVAGSLRGLADLSIEELTNIKGIGPAKA 64 G ESLS ELLAILLRTGT+ ES + +AQR+L LR L D ++EE+T+IKGIGP KA Sbjct: 22 GPESLSDHELLAILLRTGTKDESVVQLAQRVLQHFEGLRLLKDATVEEMTSIKGIGPTKA 81 Query: 65 VQLKAGIELGRRMANSRLTEPVIIRSPQDAAEILTEQLRYLQKEHFVCLFLNTKNHVIAQ 124 VQ+ A +ELGRR+ S + +IR P+D A+ + E +R+L +EHFV ++LNTKN VI + Sbjct: 82 VQILAALELGRRIHQSGYNDRYVIRCPEDGAKYVMEDMRFLSQEHFVAIYLNTKNQVIHR 141 Query: 125 ETLSMGSLNASIVHPREVFRAAMKCSSAAIICAHNHPSGDPTPSPEDISLTSRLLQAGEI 184 +T+ +GSLNASIVHPREVF+ A+K S+A++IC HNHPSGDPTPS EDI +T RL + G I Sbjct: 142 KTVFIGSLNASIVHPREVFKEAIKRSAASVICVHNHPSGDPTPSREDIDVTKRLAECGRI 201 Query: 185 VGIDVLDHLIIGDSRFISLKEKGFM 209 +GI++LDHLIIGD +FISLKEKG++ Sbjct: 202 IGIELLDHLIIGDQKFISLKEKGYV 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,092,235,368 Number of extensions: 40075732 Number of successful extensions: 117999 Number of sequences better than 1.0e-05: 1677 Number of HSP's gapped: 117622 Number of HSP's successfully gapped: 1677 Length of query: 209 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 79 Effective length of database: 1,835,964,253 Effective search space: 145041175987 Effective search space used: 145041175987 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)