BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0368.0025.p (344 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL25.1 B3KL25_9BACI Cell shape determining protein, MreB/Mrl f... 650 0.0 B1DDR5.1 B1DDR5_9BACL Cell shape determining protein, MreB/Mrl f... 602 e-170 C0ZAK1.1 C0ZAK1_BREBN Rod shape-determining protein 568 e-160 Q9K8H5.1 Q9K8H5_BACHD Cell-shape determining protein 550 e-155 A8VZE3.1 A8VZE3_9BACI Lysine 2,3-aminomutase YodO family protein... 541 e-152 >B3KL25.1 B3KL25_9BACI Cell shape determining protein, MreB/Mrl family Length = 344 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/344 (93%), Positives = 332/344 (96%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVA+ TDTK+IEAVGESAKKMIGRTPG Sbjct: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVALRTDTKSIEAVGESAKKMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRS+F RHPNVMVCVPSGITAVEQRAVE Sbjct: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSIFPRHPNVMVCVPSGITAVEQRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DATKQAGAREAY IEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV Sbjct: 121 DATKQAGAREAYTIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D+SII YIKRQYNLMIGERTSE LKM+VGSA+PLE ETMEIRGRDLVTGLPK Sbjct: 181 RVAGDEMDESIISYIKRQYNLMIGERTSELLKMEVGSAMPLETVETMEIRGRDLVTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+TITSDEI EAL+DT+NAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL Sbjct: 241 TITITSDEISEALADTINAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTGSSLRSKR 344 A ETGMPVIVAENPLDCV IGTGKALENIHLFKSR+ S++RSKR Sbjct: 301 AEETGMPVIVAENPLDCVAIGTGKALENIHLFKSRSSSAVRSKR 344 >B1DDR5.1 B1DDR5_9BACL Cell shape determining protein, MreB/Mrl family Length = 342 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 292/344 (84%), Positives = 324/344 (94%), Gaps = 2/344 (0%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M GGF+KDLGIDLGTANTLV+V+GKGIVVREPSVVA+ TDTKTIEAVGE AKKMIGRTPG Sbjct: 1 MFGGFSKDLGIDLGTANTLVFVKGKGIVVREPSVVALRTDTKTIEAVGEQAKKMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NIRA+RPMKDGVIADF+TTATMIKYFIR AQKQ+S+F +HPNVMVCVPSGITAVE+RAVE Sbjct: 61 NIRAVRPMKDGVIADFETTATMIKYFIRSAQKQKSLFPKHPNVMVCVPSGITAVEKRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DA KQAGAREAY IEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRS+ Sbjct: 121 DAAKQAGAREAYTIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D++IIQYIKR YNLMIGERT+EQLKM++G+ALP + +E++EIRGRDLVTGLPK Sbjct: 181 RVAGDEMDEAIIQYIKRFYNLMIGERTAEQLKMEIGTALPFDISESIEIRGRDLVTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 TL ITS+E+ EAL DTVN+IV+AVK+TLEKCPPEL+ADIMDRGIVLTGGGALLRNLDKLL Sbjct: 241 TLPITSEEVTEALMDTVNSIVDAVKITLEKCPPELSADIMDRGIVLTGGGALLRNLDKLL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTGSSLRSKR 344 ARETGMPVIVA+NPLDCV IGTG++L++IHLFK G S RSKR Sbjct: 301 ARETGMPVIVADNPLDCVAIGTGRSLDHIHLFKK--GGSSRSKR 342 >C0ZAK1.1 C0ZAK1_BREBN Rod shape-determining protein Length = 347 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 275/345 (79%), Positives = 316/345 (91%), Gaps = 1/345 (0%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M GGFT+DLGIDLGTANTLV+V+GKGIVVREPSVVAI T+ +IEAVG +AK MIGRTPG Sbjct: 1 MFGGFTRDLGIDLGTANTLVFVKGKGIVVREPSVVAIRTNNNSIEAVGNAAKSMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NI A+RPMKDGVIADFDTTATM++YFI QAQK + +F R PNVMVCVPSGITAVE+RAVE Sbjct: 61 NIVAVRPMKDGVIADFDTTATMMRYFINQAQKNQGLFTRRPNVMVCVPSGITAVEKRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DATKQAGA+EAY IEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTSRS+ Sbjct: 121 DATKQAGAKEAYTIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSRSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D++IIQYIKR+YNLMIGERTSE LK+++GSA+ ++ E ++IRGRDLVTGLPK Sbjct: 181 RVAGDEMDEAIIQYIKRRYNLMIGERTSETLKLEIGSAIAPDEVENVDIRGRDLVTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 TL+++S EI EAL++T++AIVE+VKVTLEK PPELAADIMDRGIVLTGGGALLRN+D+LL Sbjct: 241 TLSVSSTEIAEALAETISAIVESVKVTLEKSPPELAADIMDRGIVLTGGGALLRNMDRLL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTG-SSLRSKR 344 ++ETGMPV VAEN LDCV IGTG+ALENIHLFKS+ G +S R KR Sbjct: 301 SKETGMPVHVAENALDCVAIGTGRALENIHLFKSKQGITSSRLKR 345 >Q9K8H5.1 Q9K8H5_BACHD Cell-shape determining protein Length = 346 Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust. Identities = 267/344 (77%), Positives = 305/344 (88%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M GGF+KD+GIDLGTANTLVYV+GKGIV+REPSVVA TDT TIEAVG AK MIGRTPG Sbjct: 1 MFGGFSKDIGIDLGTANTLVYVKGKGIVLREPSVVAKRTDTGTIEAVGNDAKNMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NI A RPMKDGVIADF+TTATM+KYFIRQAQK RS+F R P VMVCVPSGITAVE+RAVE Sbjct: 61 NIVATRPMKDGVIADFETTATMLKYFIRQAQKNRSIFTRKPAVMVCVPSGITAVEKRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DATKQAGA+ AY +EEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+S+ Sbjct: 121 DATKQAGAKYAYTLEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSI 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D++IIQYIK+ YNLMIGERT+E LK+++GSA E + M+IRGRDL+TGLPK Sbjct: 181 RVAGDEMDEAIIQYIKKTYNLMIGERTAEALKLEIGSAGSPEGVDNMDIRGRDLLTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+ +T++EI +ALSDTV I+EAVK TLE+ PPELAADIMDRGIVLTGGGALLRNLDK+L Sbjct: 241 TIEVTAEEISKALSDTVQTIIEAVKNTLEQSPPELAADIMDRGIVLTGGGALLRNLDKVL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTGSSLRSKR 344 + ET MPVIVAE PLDCV IGTG+ALEN+HLF+S+ G + + R Sbjct: 301 SDETNMPVIVAEEPLDCVAIGTGRALENLHLFRSKAGITSSADR 344 >A8VZE3.1 A8VZE3_9BACI Lysine 2,3-aminomutase YodO family protein EC=5.4.3.2 Length = 345 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/344 (77%), Positives = 298/344 (86%) Query: 1 MLGGFTKDLGIDLGTANTLVYVRGKGIVVREPSVVAINTDTKTIEAVGESAKKMIGRTPG 60 M GF+KDLGIDLGTANTLVYV+GKG+++REPSVVAI DT IEAVG A+ MIGRTPG Sbjct: 1 MFAGFSKDLGIDLGTANTLVYVKGKGVILREPSVVAIRQDTGHIEAVGSDARNMIGRTPG 60 Query: 61 NIRAIRPMKDGVIADFDTTATMIKYFIRQAQKQRSMFQRHPNVMVCVPSGITAVEQRAVE 120 NI AIRPM+DGVIADFDTTATM+KYFIRQA + RS+F R PNVMVCVPSGITAVE+RAVE Sbjct: 61 NIVAIRPMRDGVIADFDTTATMMKYFIRQALRNRSIFTRKPNVMVCVPSGITAVEKRAVE 120 Query: 121 DATKQAGAREAYIIEEPFAAAIGADLPVWEPTGSMVVDIGGGTTEVAVISLGGIVTSRSV 180 DATKQAGA+EAY IEEPFAAAIGA+LPVWEPTGSMVVDIGGGTTEVA+ISLGGIVTS+SV Sbjct: 121 DATKQAGAKEAYTIEEPFAAAIGANLPVWEPTGSMVVDIGGGTTEVAIISLGGIVTSQSV 180 Query: 181 RVAGDEADDSIIQYIKRQYNLMIGERTSEQLKMDVGSALPLEKTETMEIRGRDLVTGLPK 240 RVAGDE D+SI+QYIKR Y+LMIGERT+E +K ++GSA M+IRGRDLVTGLPK Sbjct: 181 RVAGDEMDESIVQYIKRTYSLMIGERTAESIKFEIGSASKEHPGGDMDIRGRDLVTGLPK 240 Query: 241 TLTITSDEICEALSDTVNAIVEAVKVTLEKCPPELAADIMDRGIVLTGGGALLRNLDKLL 300 T+TIT EI AL DTVNAIV AVK TLE+ PPELAADIMDRGIVLTGGGALL+NLD +L Sbjct: 241 TMTITGSEIAGALEDTVNAIVAAVKDTLEQSPPELAADIMDRGIVLTGGGALLKNLDHVL 300 Query: 301 ARETGMPVIVAENPLDCVVIGTGKALENIHLFKSRTGSSLRSKR 344 ET MPV VAE+PLD V IGTGKALEN+HLF+S+ G + RS R Sbjct: 301 GNETNMPVHVAEDPLDSVAIGTGKALENLHLFRSKAGITARSNR 344 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,906,343,171 Number of extensions: 78234594 Number of successful extensions: 259558 Number of sequences better than 1.0e-05: 3975 Number of HSP's gapped: 257603 Number of HSP's successfully gapped: 3976 Length of query: 344 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 208 Effective length of database: 1,779,438,163 Effective search space: 370123137904 Effective search space used: 370123137904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)